Hi, I tried to run the program vi conda.
My commands:
calib -f SF_1.fastq.gz -r SF_2.fastq.gz -l 8 -o SF --gzip-input --no-sort --threads 8 # for creating cluster file
The first step runs smoothly.
calib_cons -c SFcluster -q SF_1.fastq.gz SF_2.fastq.gz -o SF_1.out SF_2.out -t 8
This exits after reading the fastq file (because it is gzipped). I used file streaming to solve the problem, but can the -g parameter be implemented here as well?
Thank you
@baraaorabi
Hi, I tried to run the program vi conda.
My commands:
calib -f SF_1.fastq.gz -r SF_2.fastq.gz -l 8 -o SF --gzip-input --no-sort --threads 8 # for creating cluster fileThe first step runs smoothly.
calib_cons -c SFcluster -q SF_1.fastq.gz SF_2.fastq.gz -o SF_1.out SF_2.out -t 8This exits after reading the fastq file (because it is gzipped). I used file streaming to solve the problem, but can the
-gparameter be implemented here as well?Thank you
@baraaorabi