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calib_con cannot accept gzipped files #38

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@roni-fultheim

Hi, I tried to run the program vi conda.

My commands:

calib -f SF_1.fastq.gz -r SF_2.fastq.gz -l 8 -o SF --gzip-input --no-sort --threads 8 # for creating cluster file
The first step runs smoothly.

calib_cons -c SFcluster -q SF_1.fastq.gz SF_2.fastq.gz -o SF_1.out SF_2.out -t 8
This exits after reading the fastq file (because it is gzipped). I used file streaming to solve the problem, but can the -g parameter be implemented here as well?

Thank you
@baraaorabi

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