cBioPortalData/CITATION.cff at devel · waldronlab/cBioPortalData · GitHub

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# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------

cff-version: 1.2.0
message: 'To cite package "cBioPortalData" in publications use:'
type: software
license: AGPL-3.0-only
title: 'cBioPortalData: Exposes and Makes Available Data from the cBioPortal Web Resources'
version: 2.25.1
doi: 10.1200/CCI.19.00119
abstract: The cBioPortalData R package accesses study datasets from the cBio Cancer
  Genomics Portal. It accesses the data either from the pre-packaged zip / tar files
  or from the API interface that was recently implemented by the cBioPortal Data Team.
  The package can provide data in either tabular format or with MultiAssayExperiment
  object that uses familiar Bioconductor data representations.
authors:
- family-names: Waldron
  given-names: Levi
  email: lwaldron.research@gmail.com
- family-names: Ramos
  given-names: Marcel
  email: marcel.ramos@sph.cuny.edu
  orcid: https://orcid.org/0000-0002-3242-0582
preferred-citation:
  type: article
  title: Multiomic Integration of Public Oncology Databases in Bioconductor
  authors:
  - family-names: Ramos
    given-names: Marcel
    email: marcel.ramos@sph.cuny.edu
    orcid: https://orcid.org/0000-0002-3242-0582
  - family-names: Geistlinger
    given-names: Ludwig
  - family-names: Oh
    given-names: Sehyun
  - family-names: Schiffer
    given-names: Lucas
  - family-names: Azhar
    given-names: Rimsha
  - family-names: Kodali
    given-names: Hanish
  - family-names: Bruijn
    given-names: Ino
    name-particle: de
  - family-names: Gao
    given-names: Jianjiong
  - family-names: Carey
    given-names: Vincent J.
  - family-names: Morgan
    given-names: Martin
  - family-names: Waldron
    given-names: Levi
    email: lwaldron.research@gmail.com
  journal: JCO Clinical Cancer Informatics
  volume: '1'
  issue: '4'
  year: '2020'
  doi: 10.1200/CCI.19.00119
  notes: 'PMID: 33119407'
  url: https://ascopubs.org/doi/pdf/10.1200/CCI.19.00119
  start: 958-971
repository: https://bioconductor.org/
repository-code: https://github.com/waldronlab/cBioPortalData
url: https://github.com/waldronlab/cBioPortalData
date-released: '2026-02-23'
contact:
- family-names: Ramos
  given-names: Marcel
  email: marcel.ramos@sph.cuny.edu
  orcid: https://orcid.org/0000-0002-3242-0582
keywords:
- bioconductor-package
- nci-itcr
- u24ca289073
references:
- type: manual
  title: 'cBioPortalData: Exposes and Makes Available Data from the cBioPortal Web
    Resources'
  authors:
  - family-names: Waldron
    given-names: Levi
    email: lwaldron.research@gmail.com
  - family-names: Ramos
    given-names: Marcel
    email: marcel.ramos@sph.cuny.edu
    orcid: https://orcid.org/0000-0002-3242-0582
  year: '2026'
  notes: R package version 2.25.1
  url: https://github.com/waldronlab/cBioPortalData