Case: Lab-team use a subset (or all) of barcodes that should be present after basecalling in the run folder.
Possible scenario: Some of the barcode folders may be missing despite their usage from the lab-team.
In the current state, the barcode_collection function in ont.py outputs a list of barcode paths in iRODS. If a barcode folder is missing, although was used from the lab-team, it continues after logging a warning.
We should discuss whether this should be considered as an error or leave it as warning.
Case: Lab-team use a subset (or all) of barcodes that should be present after basecalling in the run folder.
Possible scenario: Some of the barcode folders may be missing despite their usage from the lab-team.
In the current state, the barcode_collection function in ont.py outputs a list of barcode paths in iRODS. If a barcode folder is missing, although was used from the lab-team, it continues after logging a warning.
We should discuss whether this should be considered as an error or leave it as warning.