tpfold/ftesm2_0516_loss21231877.err at main · xtzhang0216/tpfold · GitHub

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/var/spool/slurmd/job1231877/slurm_script: line 11: cd: /pubhome/xtzhang/myesm/: No such file or directory
/lustre/gst/xuchunfu/zhangxt/anaconda3/envs/protein_predict/lib/python3.8/site-packages/torch/distributed/launch.py:180: FutureWarning: The module torch.distributed.launch is deprecated
and will be removed in future. Use torchrun.
Note that --use_env is set by default in torchrun.
If your script expects `--local_rank` argument to be set, please
change it to read from `os.environ['LOCAL_RANK']` instead. See
https://pytorch.org/docs/stable/distributed.html#launch-utility for
further instructions

  warnings.warn(
WARNING:torch.distributed.run:
*****************************************
Setting OMP_NUM_THREADS environment variable for each process to be 1 in default, to avoid your system being overloaded, please further tune the variable for optimal performance in your application as needed.
*****************************************
Traceback (most recent call last):
  File "/lustre/gst/xuchunfu/zhangxt/myesm/fie2_loss2.py", line 403, in <module>
    ddp_main(args)
  File "/lustre/gst/xuchunfu/zhangxt/myesm/fie2_loss2.py", line 108, in ddp_main
    with open(f"{split_file}","r") as f:
FileNotFoundError: [Errno 2] No such file or directory: '/lustre/gst/xuchunfu/zhangxt/data/random_split.json'
Traceback (most recent call last):
  File "/lustre/gst/xuchunfu/zhangxt/myesm/fie2_loss2.py", line 403, in <module>
    ddp_main(args)
  File "/lustre/gst/xuchunfu/zhangxt/myesm/fie2_loss2.py", line 108, in ddp_main
    with open(f"{split_file}","r") as f:
FileNotFoundError: [Errno 2] No such file or directory: '/lustre/gst/xuchunfu/zhangxt/data/random_split.json'
Traceback (most recent call last):
  File "/lustre/gst/xuchunfu/zhangxt/myesm/fie2_loss2.py", line 403, in <module>
    ddp_main(args)
  File "/lustre/gst/xuchunfu/zhangxt/myesm/fie2_loss2.py", line 108, in ddp_main
    with open(f"{split_file}","r") as f:
FileNotFoundError: [Errno 2] No such file or directory: '/lustre/gst/xuchunfu/zhangxt/data/random_split.json'
Traceback (most recent call last):
  File "/lustre/gst/xuchunfu/zhangxt/myesm/fie2_loss2.py", line 403, in <module>
    ddp_main(args)
  File "/lustre/gst/xuchunfu/zhangxt/myesm/fie2_loss2.py", line 108, in ddp_main
    with open(f"{split_file}","r") as f:
FileNotFoundError: [Errno 2] No such file or directory: '/lustre/gst/xuchunfu/zhangxt/data/random_split.json'
ERROR:torch.distributed.elastic.multiprocessing.api:failed (exitcode: 1) local_rank: 0 (pid: 1534192) of binary: /lustre/gst/xuchunfu/zhangxt/anaconda3/envs/protein_predict/bin/python3
Traceback (most recent call last):
  File "/lustre/gst/xuchunfu/zhangxt/anaconda3/envs/protein_predict/lib/python3.8/runpy.py", line 194, in _run_module_as_main
    return _run_code(code, main_globals, None,
  File "/lustre/gst/xuchunfu/zhangxt/anaconda3/envs/protein_predict/lib/python3.8/runpy.py", line 87, in _run_code
    exec(code, run_globals)
  File "/lustre/gst/xuchunfu/zhangxt/anaconda3/envs/protein_predict/lib/python3.8/site-packages/torch/distributed/launch.py", line 195, in <module>
    main()
  File "/lustre/gst/xuchunfu/zhangxt/anaconda3/envs/protein_predict/lib/python3.8/site-packages/torch/distributed/launch.py", line 191, in main
    launch(args)
  File "/lustre/gst/xuchunfu/zhangxt/anaconda3/envs/protein_predict/lib/python3.8/site-packages/torch/distributed/launch.py", line 176, in launch
    run(args)
  File "/lustre/gst/xuchunfu/zhangxt/anaconda3/envs/protein_predict/lib/python3.8/site-packages/torch/distributed/run.py", line 753, in run
    elastic_launch(
  File "/lustre/gst/xuchunfu/zhangxt/anaconda3/envs/protein_predict/lib/python3.8/site-packages/torch/distributed/launcher/api.py", line 132, in __call__
    return launch_agent(self._config, self._entrypoint, list(args))
  File "/lustre/gst/xuchunfu/zhangxt/anaconda3/envs/protein_predict/lib/python3.8/site-packages/torch/distributed/launcher/api.py", line 246, in launch_agent
    raise ChildFailedError(
torch.distributed.elastic.multiprocessing.errors.ChildFailedError:
============================================================
/lustre/gst/xuchunfu/zhangxt/myesm/fie2_loss2.py FAILED
------------------------------------------------------------
Failures:
[1]:
  time      : 2023-05-16_04:35:35
  host      : c02b22n01
  rank      : 1 (local_rank: 1)
  exitcode  : 1 (pid: 1534193)
  error_file: <N/A>
  traceback : To enable traceback see: https://pytorch.org/docs/stable/elastic/errors.html
[2]:
  time      : 2023-05-16_04:35:35
  host      : c02b22n01
  rank      : 2 (local_rank: 2)
  exitcode  : 1 (pid: 1534194)
  error_file: <N/A>
  traceback : To enable traceback see: https://pytorch.org/docs/stable/elastic/errors.html
[3]:
  time      : 2023-05-16_04:35:35
  host      : c02b22n01
  rank      : 3 (local_rank: 3)
  exitcode  : 1 (pid: 1534195)
  error_file: <N/A>
  traceback : To enable traceback see: https://pytorch.org/docs/stable/elastic/errors.html
------------------------------------------------------------
Root Cause (first observed failure):
[0]:
  time      : 2023-05-16_04:35:35
  host      : c02b22n01
  rank      : 0 (local_rank: 0)
  exitcode  : 1 (pid: 1534192)
  error_file: <N/A>
  traceback : To enable traceback see: https://pytorch.org/docs/stable/elastic/errors.html
============================================================