TideHunter-v1.4.0

• Add aveMatch information for each consensus sequences, denoting the average percent of matched bases between each unit sequence and the consensus sequence.
• Add option -u/--unit-seq to only output the unit sequences of each tandem repeat, no consensus sequence will be generated.
• Fix a memory leak bug

TideHunter-v1.3.0

• Achieve further speed improvement due to using the latest version of abPOA.
• Default maximum period size is changed to 10K (was 100K).
  • Note that large memory consumption is expected for the large maximum period size.

TideHunter-v1.2.2

• Fix a bug in tabular output

TideHunter-v1.2.1

• Add position information of each detected tandem repeat unit sequence in the output file.
• Fix a few bugs

TideHunter-v1.1.1

Fix a bug related to max score during the POA

TideHunter-v1.1

Changes since the last release:

• Fix a segfault in consensus generating step
• Apply a new method to calculate the medoid anchor

First release

The first release of TideHunter: v1.0