Skip to content
View Adamtaranto's full-sized avatar
77 followers · 87 following

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@COMBINE-Canberra @bioconda @WEHI-Education

Block or report Adamtaranto

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
adamtaranto/README.md

Adam Taranto

I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.

👩‍💻 What I'm currently working on

  • Adamtaranto/deRIP2 - Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments. (2 days ago)
  • bioconda/bioconda-recipes - Conda recipes for the bioconda channel. (5 days ago)
  • WEHI-Education/Workshop-intermediate-slurm - Intermedate Slurm Workshop source code using the Software Carpentry Workbench style. (6 days ago)
  • tanghaibao/jcvi - Python library to facilitate genome assembly, annotation, and comparative genomics (1 week ago)
  • Adamtaranto/TIRmite - Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features. (1 week ago)

🔭 Latest releases I've contributed to

  • Adamtaranto/deRIP2 (v0.4.2, 5 days ago) - Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments.
  • tseemann/mlst (v2.35.0, 3 weeks ago) - 🆔 Scan contig files against PubMLST typing schemes
  • Adamtaranto/TIRmite (v1.4.0, 2 months ago) - Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.
  • dalofa/telomore (v0.4.1, 5 months ago) - A tool for extending linear bacterial (primarily actinomycete) replicons to capture the telomere
  • Adamtaranto/tSplit (v0.3.0, 5 months ago) - Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.

GitHub Streak

GitHub Stats

Pinned Loading

  1. teloclip teloclip Public

    A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

    Python 52 4

  2. TIRmite TIRmite Public

    Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.

    Python 10 4

  3. tanghaibao/jcvi tanghaibao/jcvi Public

    Python library to facilitate genome assembly, annotation, and comparative genomics

    Python 922 201

  4. flexidot-bio/flexidot flexidot-bio/flexidot Public

    Highly customizable, ambiguity-aware dotplots for visual sequence analyses

    Python 125 17

  5. pypopart pypopart Public

    Python reimplementation of PopART tool for creating haplotype networks

    Python 2