isort imports

Author: Adamtaranto

src/teloclip/app.py

@@ -20,7 +20,7 @@
 from teloclip._version import __version__
 from teloclip.logs import init_logging
 from teloclip.samops import processSamlines
-from teloclip.seqops import read_fai, addRevComplement
+from teloclip.seqops import addRevComplement, read_fai
 
 
 def mainArgs():

src/teloclip/app_extract.py

@@ -6,7 +6,7 @@
 from teloclip._version import __version__
 from teloclip.logs import init_logging
 from teloclip.samops import StreamingSamFilter
-from teloclip.seqops import writefasta, read_fai
+from teloclip.seqops import read_fai, writefasta
 
 """
 Module under development. Currently splits overhang reads of each contig end into separate fata files. 

src/teloclip/motifs.py

@@ -1,5 +1,5 @@
 import re
-from typing import List, Tuple, Dict
+from typing import Dict, List, Tuple
 
 
 def format_pattern_counts(pattern_counts: Dict[str, int]) -> str:

tests/test_motifs.py

@@ -1,10 +1,11 @@
 import pytest
+
 from src.teloclip.motifs import (
-    count_continuous_runs,
+    check_sequence_for_patterns,
     construct_regex_pattern,
-    format_pattern_counts,
+    count_continuous_runs,
     count_patterns_in_sequence,
-    check_sequence_for_patterns,
+    format_pattern_counts,
 )