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Splicing Graph ALigner (SGAL) performs an accurate approximate mapping of RNA-seq reads against a graph representing the transcripts of a gene.
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This version is the one submitted to AlCoB 2017 (http://grammars.grlmc.com/AlCoB2017/).
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This version of the tool is the one submitted to AlCoB 2017 (http://grammars.grlmc.com/AlCoB2017/).
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### Prerequisites
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* python3 (maybe also python is good enough but I didn't test it)
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./run genomic.fa annotation.gff rna_seqs.fa 3 5 gene out
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```
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This version has been tested on 64bit Linux system.
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The tool has been tested only on 64bit Linux system.
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[](https://gitter.im/AlgoLab/galig?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge)
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