34 add pyright to ci

.github/workflows/ci.yml

@@ -5,7 +5,7 @@ on: [push, pull_request]
 jobs:
   all_jobs:
     runs-on: ubuntu-latest
-    needs: [formatting, pytest]
+    needs: [formatting, type-checking, pytest]
     steps:
       - name: Complete
         run: echo "Complete"
@@ -50,6 +50,29 @@ jobs:
         run: |
           uv run ruff format --check
 
+  type-checking:
+    runs-on: ubuntu-latest
+
+    needs: [install-job]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: install uv
+        uses: astral-sh/setup-uv@v5
+        with:
+          enable-cache: true
+          cache-dependency-glob: "pyproject.toml"
+          python-version: "3.12"
+
+      - name: install dependencies
+        run: |
+          uv sync --all-extras --dev
+
+      - name: run type checking
+        run: |
+          uv run pyright
+
   pytest:
     runs-on: ubuntu-latest
 

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "pdex"
-version = "0.1.16"
+version = "0.1.17"
 description = "Parallel differential expression for single-cell perturbation sequencing"
 readme = "README.md"
 authors = [{ name = "noam teyssier", email = "noam.teyssier@arcinstitute.org" }]
@@ -23,7 +23,7 @@ requires = ["hatchling"]
 build-backend = "hatchling.build"
 
 [dependency-groups]
-dev = ["pytest>=8.3.5", "ruff>=0.11.8"]
+dev = ["pyright>=1.1.402", "pytest>=8.3.5", "ruff>=0.11.8"]
 
 [tool.pyright]
 venvPath = "."