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chiangle and chiangles are added to calculate the sidechain dihedral angles in protein residues.
mmCIF files with secondary structure annotations will now, by default, parse and assign secondary structure. Setting run_dssp or run_stride to true will cause DSSP or STRIDE to be run and provide the secondary structure, as before.
A constructor for MetaGraph on a Chain is added that constructs a graph of atoms where edges are determined by the known bonds of standard amino acids in the chain.