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Best practices for long-read data

Status: Open.

#713 In CGATOxford/UMI-tools;

· olliecheng opened on Jun 18, 2026

umi_tools dedup is really slow

Status: Open.

#711 In CGATOxford/UMI-tools;

· Nitin123-4 opened on Jun 10, 2026

General Documentation tidy up

Documentation

Next release

Status: Open.

#708 In CGATOxford/UMI-tools;

· IanSudbery opened on May 27, 2026

Reference Counting (Use-After-Free) Bug for PyList_SetItem

Status: Open.

#701 In CGATOxford/UMI-tools;

· wr-web opened on May 4, 2026

Running umi_tools with barcodes and umi in different fastq files

Status: Open.

#691 In CGATOxford/UMI-tools;

· nbbarrientos opened on Jul 21, 2025

[DOCS] Website issues

Status: Open.

#685 In CGATOxford/UMI-tools;

· ns-rse opened on Apr 28, 2025

grouping by cell barcode and adding cell barcode tag to bams

Status: Open.

#684 In CGATOxford/UMI-tools;

· JNWorkman opened on Apr 25, 2025

Combining --cell-tag with --extract-umi-method=read_id

Status: Open.

#682 In CGATOxford/UMI-tools;

· yaccos opened on Apr 23, 2025

How to Generate a UMI Whitelist from a String List Using umitools?

Status: Open.

#681 In CGATOxford/UMI-tools;

· DC-Jade opened on Apr 14, 2025

UMIs on header

Status: Open.

#680 In CGATOxford/UMI-tools;

· RTCarmo opened on Mar 10, 2025

using regex gives empty file

Status: Open.

#674 In CGATOxford/UMI-tools;

· dewshr opened on Jan 22, 2025

Killed process dedup

Status: Open.

#671 In CGATOxford/UMI-tools;

· denise0593 opened on Nov 25, 2024