This pipeline include scripts to parse and integrate the genomic properties.
The outcome include genome coverage, genome and 16S rRNA taxonomy, tRNAs, genome completeness, and scaffold parameters.
Default software in the users' path:
Software | Suggested version (versions >= suggested versions are applicable on the most cases)
GTDB-Tk | v0.1.3
perl | v5.22.1
CheckM | v1.0.11
BLAST | v2.2.31+
tRNAscan-SE | v2.0