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…ers, arm generator logic. Need to update standardDirectives and dateFilters if any are to be implemented (check w/ Matt). Added unit and integration tests for the new extraction pipeline.
Removing bad test cases (will not hold up over time).
Reducing idBatchSize to 10 to prevent overloading RedCap. Updated tests, removed debugging changes.
…r table was added as well. Created a new TransformationHelper function to process AFUS records where data for a single record is spread across multiple arms. Added tests: pipeline test, unit tests for the owner transformations, and new transformation helper method.
Updated unit tests to make sure we are trimming whitespace.
…e value as a long"
Added schema, pipeline builder, and transformation scripts for afus_dog. Added AfusDogDemographics and AfusDogResidence transformation.
…consistent failures. Extended transformation pipeline tests.
Refactored a common TransformationLog file to encapsulate the errors and warnings for all surveys and updated imports.
| case Some(event) => Some(event.split("_")(1).toLong) | ||
| case None => None | ||
| }, | ||
| //Some(redcapEvent.split("_")(1).filter(_.isDigit).toLong), |
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Why
Extraction and transformation pipeline for the afus_dog tables.
Relevant ticket
This PR
Added forms needed for afus_dog extraction.
Added schema fragments, pipeline builder, and transformation scripts for afus_dog.
Checklist