GenomeMCP/pyproject.toml at main · Eldergenix/GenomeMCP · GitHub

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[project]
name = "genomemcp"
version = "0.1.0"
description = "A Model Context Protocol server for querying ClinVar genomic data."
readme = "README.md"
requires-python = ">=3.10"
license = {text = "MIT"}
keywords = ["genomics", "clinvar", "mcp", "bioinformatics", "cli"]
classifiers = [
    "Development Status :: 4 - Beta",
    "Environment :: Console",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]
dependencies = [
    "mcp>=0.1.0",
    "httpx>=0.27.0",
    "xmltodict>=0.13.0",
    "supabase>=2.0.0",
    "uvicorn>=0.30.0",
]

[project.optional-dependencies]
cli = [
    "typer[all]>=0.9.0",
    "rich>=13.0.0",
    "textual>=0.40.0",
]
llm = [
    "ollama>=0.3.0",
]
research = [
    "denario>=1.0.0",  # Requires Python 3.12+
]
dev = [
    "pytest>=9.0.2",
    "pytest-asyncio>=1.3.0",
]
all = [
    "genomemcp[cli,llm,dev]",  # research excluded due to Python 3.12+ requirement
]

[project.scripts]
genomemcp = "src.cli.app:cli"

[project.entry-points."mcp.server"]
genomemcp = "src.main:mcp"

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.hatch.build.targets.wheel]
packages = ["src"]

[tool.pytest.ini_options]
asyncio_mode = "auto"
testpaths = ["tests"]