Sample Cluster Config

Sample Cluster Config

Generate by running: mtsv cluster-init

__default__:
  cpus: '{threads}'
  mem: 5000
  log: '{log}.cluster'
  jobname: '{rule}'
  time: "30:00"

fastp:
  jobname: "fastp"

readprep:
  jobname: "readprep"

binning:
  jobname: "binning"
  mem: 30000
  time: "2:00:00"

collapse:
  jobname: "collapse"

init_taxdump:
  jobname: "init_taxdump"

summary:
  jobname: "summary"
  time: "1:00:00"
  mem: 8000

filter_candidate_taxa:
  jobname: "filter_candidate_taxa"

get_candidates_not_in_database:
  jobname: "get_candidates_not_in_database"

random_kmers:
  jobname: "random_kmers"

analyze_binning:
  jobname: "analyze_binning"
  mem: 30000
  time: "1:00:00"

analyze_collapse:
  jobname: "analyze_collapse"

update_datastore:
  jobname: "update_datastore"

analysis:
  jobname: "analysis"

analysis_figure:
  jobname: "analysis_figure"

analysis_html:
  jobname: "analysis_html"

extract:
  jobname: "extract"

unaligned_queries:
  jobname: "unaligned_queries"
  mem: 8000

wgfast:
  jobname: "wgfast"
  time: "1:00:00"
  mem: 8000

wgfast_draw_tree:
  jobname: "wgfast_draw_tree"

wgfast_fasta_to_fastq:
  jobname: "wgfast_fasta_to_fastq"

wgfast_gzip:
  jobname: "wgfast_gzip"

megahit:
  jobname: "megahit"
  time: "1:00:00"
  mem: 8000

concoct_cut_up:
  jobname: "concoct_cut_up"

concoct_fasta2fastq:
  jobname: "concoct_fasta2fastq"

concoct_make_bam:
  jobname: "concoct_make_bam"

concoct_coverage_table:
  jobname: "concoct_coverage_table"

concoct:
  jobname: "concoct"

concoct_merge:
  jobname: "concoct_merge"

concoct_fasta_bins:
  jobname: "concoct_fasta_bins"