Skip to content

Ngff table export tracks#2

Closed
will-moore wants to merge 3 commits intoIDR:mainfrom
will-moore:ngff_table_export_tracks
Closed

Ngff table export tracks#2
will-moore wants to merge 3 commits intoIDR:mainfrom
will-moore:ngff_table_export_tracks

Conversation

@will-moore
Copy link
Copy Markdown
Member

@will-moore will-moore commented Mar 10, 2023

NB: this requires ome/napari-ome-zarr#81 (which also requires ome/ome-zarr-py#256) and is based on un-merged NGFF tables spec ome/ngff#64

This adds a script to generate NGFF table of tracks - this uses kevinyamauchi/ome-ngff-tables-prototype#15

This data is public and can be viewed in ome-ngff-validator:

https://deploy-preview-20--ome-ngff-validator.netlify.app/?source=https://minio-dev.openmicroscopy.org/idr/idr0113-bottes-opcclones/13425213.zarr/tables/points_table

Screenshot 2023-03-14 at 13 42 21

Viewable in napari:

Screenshot 2023-03-10 at 11 26 05

@jburel
Copy link
Copy Markdown
Member

jburel commented Mar 10, 2023

Very nice. We could look at creating a new notebook similar to the existing to show the lineage

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants