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Added several new features and debugged existing features.
Added the collapse function, which will collapse clades where all leaf names contain a specific string
Added the auto_ax function, which now runs as default and adjusts the axis limits to best display the phylogeny. This option can be turned off for manual control of the position of the tree on the axis.
Modularised the code into the draw_tree, amend_tree and get_boxes module files
Various minor updates to tests and documentation,.