feat: Add data SEAD MTG + DLPFC ETL#2
Open
diegomscoelho wants to merge 22 commits into
Open
Conversation
…scRank_2025 into sead-mtg-dlpfc-subset
diegomscoelho
commented
Apr 28, 2026
diegomscoelho
left a comment
diegomscoelho
left a comment
Contributor
Author
There was a problem hiding this comment.
Here it goes
| subset_mtg <- MTG_DEM %>% | ||
| group_by(Subclass) %>% | ||
| filter(n() >= 200) %>% | ||
| slice_sample(prop = 1) %>% |
Contributor
Author
There was a problem hiding this comment.
Suggested change
| slice_sample(prop = 1) %>% |
| set.seed(123) | ||
|
|
||
| subset_mtg <- MTG_DEM %>% | ||
| group_by(Subclass) %>% |
Contributor
Author
There was a problem hiding this comment.
Suggested change
| group_by(Subclass) %>% | |
| group_by(Stage, Subclass) %>% |
Comment on lines
+10
to
+12
| mutate(Stage = ifelse(Braak %in% c("Braak IV","Braak V","Braak VI"), | ||
| "Late Braak", | ||
| "Early Braak")) %>% |
Contributor
Author
There was a problem hiding this comment.
Suggested change
| mutate(Stage = ifelse(Braak %in% c("Braak IV","Braak V","Braak VI"), | |
| "Late Braak", | |
| "Early Braak")) %>% |
|
|
||
| #FILTRAR PACIENTES COM DEMENCIA | ||
| MTG_DEM = MTG %>% | ||
| filter(Cognitive.Status == "Dementia") |
Contributor
Author
There was a problem hiding this comment.
Suggested change
| filter(Cognitive.Status == "Dementia") | |
| filter(Cognitive.Status == "Dementia") %>% | |
| mutate(Stage = ifelse(Braak %in% c("Braak IV","Braak V","Braak VI"), | |
| "Late Braak", | |
| "Early Braak")) |
| group_by(Subclass) %>% | ||
| filter(n() >= 200) %>% | ||
| slice_sample(prop = 1) %>% | ||
| slice_head(n = 1000) %>% |
Contributor
Author
There was a problem hiding this comment.
Suggested change
| slice_head(n = 1000) %>% | |
| slice_head(n = 2000) %>% |
added 7 commits
June 15, 2026 22:45
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Description
Adding scripts to subset and extract data from scRNAseq from SEAD project to run our analysis
Test