v1.1.0

Added

• Multithreaded downloading in the API via R3ResourceBundle.download(max_workers=...), sharing the same thread-pool implementation as the CLI download command.
• available_samples, available_projects, and project_homes are now part of the public top-level recount3 API.

Changed

• Increased the default download concurrency from 4 to 8 worker threads for the CLI (--jobs), matching the new API's 8 (max_workers).

Fixed

• create_rse(genomic_unit="junction") now succeeds by default. The junction extension defaults are unit-aware and include the RR sidecar required to attach genomic coordinates, so create_rse() returns a RangedSummarizedExperiment instead of raising ValueError.
• SRA sample-attribute expansion now resolves both the R-style sra.sample_attributes column name if used and the namespaced sra__sample_attributes produced by the bundle layer.
• recount3 download now creates the --dest directory when it does not already exist (matching the existing behavior for .zip destinations).

Full changelog: https://github.com/MoseleyBioinformaticsLab/recount3/blob/main/CHANGELOG.rst

v1.0.0

Initial public release.