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2121)
2222
23- BIOMARK_BASE_URL = env ("BIOMARK_BASE_URL" , default = "https://data3.biomark.com/api/v1/" )
2423BIOMARK_API_EMAIL = env ("BIOMARK_API_EMAIL" , default = "" )
2524BIOMARK_API_PWD = env ("BIOMARK_API_PWD" , default = "" )
2625BIOMARK_AWS_ENDPOINT = env ("BIOMARK_AWS_ENDPOINT" , default = "" )
2726BIOMARK_BUCKET = env ("BIOMARK_BUCKET" , default = "" )
28- BIOMARK_PREFIX = env ("BIOMARK_PREFIX" , default = "tables" )
29- BIOMARK_REGION = env ("BIOMARK_REGION" , default = "us-east-1" )
3027BIOMARK_ACCESS_KEY = env ("BIOMARK_ACCESS_KEY" , default = "" )
3128BIOMARK_SECRET_KEY = env ("BIOMARK_SECRET_KEY" , default = "" )
29+ BIOMARK_PREFIX = env ("BIOMARK_PREFIX" , default = "tables" )
30+ BIOMARK_REGION = env ("BIOMARK_REGION" , default = "us-east-1" )
31+ BIOMARK_BASE_URL = env ("BIOMARK_BASE_URL" , default = "https://data3.biomark.com/api/v1/" )
32+
3233BIOMARK_DUCKDB_PATH = env (
3334 "BIOMARK_DUCKDB_PATH" , default = "biomark_pit_registering_salmon_v1.duckdb"
3435)
35- BIOMARK_DATASET_NAME = env ("BIOMARK_DATASET_NAME" , default = "" )
36+ BIOMARK_DATASET_NAME = env ("BIOMARK_DATASET_NAME" , default = "main " )
3637
3738app = typer .Typer ()
3839
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