When running nipet.mmrchain() I get an error that seems to come from the cuda file prjf.cu. I am unexperienced with C, so I hope you can help me out.
My parameters are:
{'corepath': './ads054-petmr01/', 'mumapDCM': 'ads054-petmr01', '#mumapDCM': 192, 'lm_dcm': 'ads054-petmr01/30000016062206483381200000003_anonym.dcm', 'lm_bf': 'ads054-petmr01/30000016062206483381200000003_anonym.bf', 'pCT': 'ads054-petmr01/sub-ads054_t1w_pct.nii.gz', 'nrm_dcm': 'ads054-petmr01/30000016062206483381200000002_anonym.dcm', 'nrm_bf': 'ads054-petmr01/30000016062206483381200000002_anonym.bf'}
The output is the following:
the given histogram does not contain a prompt sinogram--will generate a histogram.
i> the list-mode file: ads054-petmr01/30000016062206483381200000003_anonym.bf
i> number of elements in the list mode file: 383979868
i> the first time tag is: 3887688 at positon 7099.
i> the last time tag is: 4787714 at positon 383979739.
i> using time offset: 3887688
i> number of report itags is: 901
i> # chunks of data (initial): 41
i> # elechnk: 12582912
i> setting up data chunks:
i> break time tag [31] is: 900027ms at position 383979868.
i> frame start time: 15
i> frame stop time: 60
i> using CUDA device #0
i> setting up CUDA pseudorandom number generator... DONE.
i> creating 3 CUDA streams... DONE.
i> reading the first chunks of LM data from:
ads054-petmr01/30000016062206483381200000003_anonym.bf DONE.
+> histogramming the LM data:
wc> couldn't find time tag from this position onwards: 0,
assuming the last one.
+> stream[2]: 3 chunks of data are DONE.
ic> total prompt single slice rebinned sinogram: P = 15250000
ic> total prompt and delayeds sinogram events: P = 15250000, D = 4444359
ic> total prompt and delayeds head-curve events: P = 15250000, D = 4444359
ic> maximum prompt sino value: 13
i> using CUDA device #0
i> and removing the gaps and reordering sino for GPU... DONE in 0.017165s
i> calculating normalisation sinogram using device #0... DONE in 0.089437s.
After which I get the error:
invalid argument in /tmp/pip-install-r1u6rc7y/nipet_f727f69030e8494d9faf2f743df5c3d7/niftypet/nipet/prj/src/prjf.cu at line 276
When running nipet.mmrchain() I get an error that seems to come from the cuda file prjf.cu. I am unexperienced with C, so I hope you can help me out.
My parameters are:
{'corepath': './ads054-petmr01/', 'mumapDCM': 'ads054-petmr01', '#mumapDCM': 192, 'lm_dcm': 'ads054-petmr01/30000016062206483381200000003_anonym.dcm', 'lm_bf': 'ads054-petmr01/30000016062206483381200000003_anonym.bf', 'pCT': 'ads054-petmr01/sub-ads054_t1w_pct.nii.gz', 'nrm_dcm': 'ads054-petmr01/30000016062206483381200000002_anonym.dcm', 'nrm_bf': 'ads054-petmr01/30000016062206483381200000002_anonym.bf'}The output is the following:
After which I get the error: