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Prepare tools for icenet #60

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Prepare tools for icenet #60

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567453a
adding tool for preprocessing icenet data
vanessa-tamara Feb 10, 2023
189b627
added delta to size in bytes
vanessa-tamara Feb 10, 2023
1bac89d
added header for python files
vanessa-tamara Feb 14, 2023
b603ff4
changed preprocessing tool
vanessa-tamara Mar 4, 2023
40de7a7
preprocessing has no test data for now
vanessa-tamara Apr 5, 2023
82d17a1
updated preprocess tool (flake8 + xml + config file parameter)
vanessa-tamara Apr 10, 2023
a9255b5
icenet folder with icenet tools
vanessa-tamara Jun 16, 2023
9868ed6
created all of the tools needed for the icenet workflow
vanessa-tamara Sep 13, 2023
1385860
added createRequest with correct output filename
vanessa-tamara Sep 22, 2023
c779997
specify numpy format to binary
vanessa-tamara Sep 26, 2023
bde063a
mistake in output dir
vanessa-tamara Sep 28, 2023
5560540
removed hardcoded ensemble members
vanessa-tamara Oct 4, 2023
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26 changes: 13 additions & 13 deletions tools/icenet/icenet_preprocess.xml
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Expand Up @@ -57,43 +57,43 @@
<outputs>
<data name="siconca_EASE_file" format="netcdf" from_work_dir="data/obs/siconca_EASE.nc"/>
<collection name="siconca_dataset" type="list">
<discover_datasets pattern="__name_and_ext__" directory="data/network_datasets/dataset1/obs/siconca/abs"/>
<discover_datasets pattern="__name__" format="binary" directory="data/network_datasets/dataset1/obs/siconca/abs"/>
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@bgruening bgruening Sep 26, 2023

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Why binary? What is this in real? Can we not output here a real standard fileformat?

</collection>
<collection name="linear_trend_dataset" type="list">
<discover_datasets pattern="__name_and_ext__" directory="data/network_datasets/dataset1/obs/siconca/linear_trend"/>
<discover_datasets pattern="__name__" format="binary" directory="data/network_datasets/dataset1/obs/siconca/linear_trend"/>
</collection>
<collection name="tas_dataset" type="list">
<discover_datasets pattern="__name_and_ext__" directory="data/network_datasets/dataset1/obs/tas/anom"/>
<discover_datasets pattern="__name__" format="binary" directory="data/network_datasets/dataset1/obs/tas/anom"/>
</collection>
<collection name="ta500_dataset" type="list">
<discover_datasets pattern="__name_and_ext__" directory="data/network_datasets/dataset1/obs/ta500/anom"/>
<discover_datasets pattern="__name__" format="binary" directory="data/network_datasets/dataset1/obs/ta500/anom"/>
</collection>
<collection name="tos_dataset" type="list">
<discover_datasets pattern="__name_and_ext__" directory="data/network_datasets/dataset1/obs/tos/anom"/>
<discover_datasets pattern="__name__" format="binary" directory="data/network_datasets/dataset1/obs/tos/anom"/>
</collection>
<collection name="rsds_dataset" type="list">
<discover_datasets pattern="__name_and_ext__" directory="data/network_datasets/dataset1/obs/rsds/anom"/>
<discover_datasets pattern="__name__" format="binary" directory="data/network_datasets/dataset1/obs/rsds/anom"/>
</collection>
<collection name="rsus_dataset" type="list">
<discover_datasets pattern="__name_and_ext__" directory="data/network_datasets/dataset1/obs/rsus/anom"/>
<discover_datasets pattern="__name__" format="binary" directory="data/network_datasets/dataset1/obs/rsus/anom"/>
</collection>
<collection name="psl_dataset" type="list">
<discover_datasets pattern="__name_and_ext__" directory="data/network_datasets/dataset1/obs/psl/anom"/>
<discover_datasets pattern="__name__" format="binary" directory="data/network_datasets/dataset1/obs/psl/anom"/>
</collection>
<collection name="zg500_dataset" type="list">
<discover_datasets pattern="__name_and_ext__" directory="data/network_datasets/dataset1/obs/zg500/anom"/>
<discover_datasets pattern="__name__" format="binary" directory="data/network_datasets/dataset1/obs/zg500/anom"/>
</collection>
<collection name="zg250_dataset" type="list">
<discover_datasets pattern="__name_and_ext__" directory="data/network_datasets/dataset1/obs/zg250/anom"/>
<discover_datasets pattern="__name__" format="binary" directory="data/network_datasets/dataset1/obs/zg250/anom"/>
</collection>
<collection name="ua10_dataset" type="list">
<discover_datasets pattern="__name_and_ext__" directory="data/network_datasets/dataset1/obs/ua10/abs" />
<discover_datasets pattern="__name__" format="binary" directory="data/network_datasets/dataset1/obs/ua10/abs" />
</collection>
<collection name="uas_dataset" type="list">
<discover_datasets pattern="__name_and_ext__" directory="data/network_datasets/dataset1/obs/uas/abs" />
<discover_datasets pattern="__name__" format="binary" directory="data/network_datasets/dataset1/obs/uas/abs" />
</collection>
<collection name="vas_dataset" type="list">
<discover_datasets pattern="__name_and_ext__" directory="data/network_datasets/dataset1/obs/vas/abs"/>
<discover_datasets pattern="__name__" format="binary" directory="data/network_datasets/dataset1/obs/vas/abs"/>
</collection>
</outputs>
<tests>
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