v0.8.0-beta

What's Changed

• Remove env files by @satish-a0 in #165
• [Integrate-1887] add status as dependency in run flow by @suwarnoong in #158
• [KangJingA/integrate-1895] add artifacts, task runs, clean up css by @KangJingA in #156
• [Integrate-1366] if mail is empty, fallback to userPrincipalName by @suwarnoong in #153
• [Analyze-2019] Fix cohort generator flow by @brandantck in #169
• [Internal-1461] Add self-host supabase storage by @hengxian-jiang in #14
• Fix demo setup ci by @hengxian-jiang in #174
• [Integrate-1896] clear result upon run flow by @suwarnoong in #162
• [Integrate-1849] enable autoSelect and helperText in AutoComplete by @suwarnoong in #167
• [Integrate-1931] change UI payload for dbwriter and py2table by @suwarnoong in #171
• [Integrate-1929] remove strategus & data mapping nodes in flow ui by @suwarnoong in #178
• [adhoc] fix node spacing in add node dialog by @suwarnoong in #179
• [Integrate-1940] combine setup demo dataset to one step by @suwarnoong in #176
• [data-1812] Create dc results schema without liquibase by @alicia-koh in #168
• Adapt Dqd & DC by @satish-a0 in #173
• Disable provenance by @satish-a0 in #182
• [data-971-1] Move liquibase to data management plugin by @alicia-koh in #184
• disable r-kernel build by default by @SantanM in #107
• Refactor fhir server project name by @csafreen in #143
• [Analyze 1297] Add FHIR pa and cdmconfig by @brandantck in #96
• [integrate-1971-1989] Run all cells, Jupyter kernel management by @KangJingA in #180
• Bug Fix: Use const instead of let in Add Study Dialog box by @csafreen in #190
• Use auto generated password for demodb by @csafreen in #186
• Fix Http tests by @satish-a0 in #192
• Add no proxy & duckdb extensions by @satish-a0 in #198
• [data-1909] Add documentation for dataflow ui by @alicia-koh in #199
• [Integrate-1926] Add git configuration on setup page UI by @hengxian-jiang in #189
• [Integrate-1926] Add git support for dataflow/notebook by @hengxian-jiang in #177
• [Integrate-1928] add data mapping node in dataflow-ui by @suwarnoong in #196
• Add headers for omop cdm v5.3 by @csafreen in #194
• Flows: Remove libraries not in use by @csafreen in #166
• Delete fhir project when portal dataset is deleted by @csafreen in #170
• [data-1968] Use Supabase for CSV Node by @alicia-koh in #197
• [Internal-1996] Add Chat Endpoint› by @Zhimin-arya in #185
• [Integrate-1995] install white rabbit flow by default by @KangJingA in #188
• [Integrate-2031] CSV node misc update by @hengxian-jiang in #202
• [Integrate-1988] chat UI implementation by @KangJingA in #193
• [integrate-2042] add loaders to jobs ui by @KangJingA in #203
• [Devops-1868] Update setup endpoint and cli.sh by @mwaiyee in #200
• [integrate-2057] support other delimiters for csv files by @KangJingA in #204
• Improve plugin load logic by @jerome-ng in #187
• [Analyze-1848] Fix pyqe concept set content parsing by @brandantck in #191
• add e2e test by @p-hoffmann in #224
• [Integrate-2029] remove table mapping in sql node by @suwarnoong in #206
• [Adhoc] public path in webpack flow ui by @suwarnoong in #211
• [Integrate-2025] import a flow from json file by @suwarnoong in #217
• [Integrate-2030] Upload csv node file to supabase-storage by @hengxian-jiang in #208
• [Integrate-2039] Support overwrite local dataflows from remote repository by @hengxian-jiang in #218
• [data-2021] Throw error during build if R package is not installed by @alicia-koh in #207
• change uuid to random string by @p-hoffmann in #228
• [data-1994] Remove parquet support from datamart plugin by @alicia-koh in #201
• [internal-1867] check db code by @SantanM in #183
• [integrate 2047] Enable language selector in portal by @KangJingA in #210
• [Devops] Evaluate mlflow by @mwaiyee in #222
• Group data transformation flows into a separate plugin by @csafreen in #216
• [integrate 2035] fix jupyter notebook import/export; fix synpuf5pct demo by @KangJingA in #220
• call cli script directly by @p-hoffmann in #227
• [Analyze 2046] Add 1 to many mapping for saved filters to materialized cohort by @brandantck in #212
• [Integrate-2041] move fhir server to cdm schema option by @suwarnoong in #223
• [data-1992] Change Data Mapping Node to use scan report by @alicia-koh in #230
• [Integrate-2045] remove auto-set edge when add node by @suwarnoong in #248
• [Integrate-1927] move concept mapping to dataflow ui by @suwarnoong in #240
• [Integrate-2039] Support data-transformation template selection by @hengxian-jiang in #233
• Fix intermittent http-test failure by @hengxian-jiang in #251
• [INTERNAL-2081] Add Hana session variables by @satish-a0 in #225
• [Internal-1494] Use researcher schema for materialized cohorts by @satish-a0 in #242
• [internal-1874] logto search path by @SantanM in #232
• Adapt pull policy and latest digest by @satish-a0 in #209
• replace fetching results from s3, instead use prefect artifacts by @SantanM in #237
• [Devops-2119] Adjust GHA dev by @mwaiyee in #245
• [internal-2049] upload stategus results to db by @SantanM in #234
• [Internal - 1997] Fix the phenotype result table name by @Zhimin-arya in #219
• Add application and user name as session variables to HANA JWT connection by @csafreen in #241
• [Devops-2137] Install sqlalchemy-hana in flow base image by @mwaiyee in #264
• [Integrate-2138] remove source option to allow all connected nodes by @suwarnoong in #253
• [Integrate-2144] update node internals instead of page reload by @suwarnoong in #256
• [Integrate-2038] change browser title to Data2Evidence by @suwarnoong in #257
• [Analyze-2032] Fix concept set query by @brandantck in #254
• [Integrate-2153] ui plugin translation by @suwarnoong in #260
• [Integrate-2114] include thirdPartyRefreshToken in custom jwt by @suwarnoong in #259
• [Integrate-2039] Support overwrite notebook from remote repo/notebook template by @hengxian-jiang in #236
• [Devops-2120] Fix gha UI build by @mwaiyee in #255
• fix chat url endpoint by @KangJingA in #261
• [Internal - 1876] Add support for MIMIC-IV v3.1 by @Zhimin-arya in #215
• [integrate-1289] handle schema case for datamart plugin by @KangJingA in #214
• [Integrate-2040] Add study screen to admin portal by @hengxian-jiang in #252
• fix db credential updates by @p-hoffmann in #263
• [internal-2160] drop study analysis results schema by @SantanM in #265
• [Integrate-2156] Execute clean up schema button by @hengxian-jiang in #277
• Add data-transformation-flow in plugins seed by @csafreen in #249
• [Data] Update DICOM ETL Plugin by @alicia-koh in #243
• cleanup package.json scripts by @p-hoffmann in #262
• [Integrate-2108] Add mlflow to portal by @KangJingA in #238
• [internal-1668] unify routes jobplugins by @SantanM in #250
• [Integrate-2143] add cdm schema to db vocab schemas for new dataset with existing schema option by @suwarnoong in #299
• [Integrate-2099] field mapping per table linkage by @suwarnoong in #275
• [Integrate-1927] rename ui path for concept-mapping by @suwarnoong in #293
• [Integrate-2139] remove snapshot location, hardcode to DB by @suwarnoong in #295
• [Integrate-2154] categorize config for public and secret by @suwarnoong in #283
• [analyze-2028] Add a close button for the concepts hierarchy by @khairul-syazwan in #279
• Add big query support by @csafreen in #235
• [internal-2163] fixes related to db user and dialect in strategus flow by @SantanM in #269
• [data-2129-2097] Add concept mapping node & Change result of node by @alicia-koh in #267
• [Analyze 1922] Add trex connection for cdw svc by @brandantck in #231
• [Analyze-2016] Update create_fts_index by @brandantck in #272
• [Analyze-1962] Fix cohort entry exit order by by @brandantck in #301
• [analyze-2110] Duplicate patientcount requests by @khairul-syazwan in #280
• [internal-2182] fix routes by @SantanM in #312
• [integrate 2163] add TREX__ENDPOINT_URL and required strategus viewer libraries to kernel by @KangJingA in #271
• [integrate 2175] by @KangJingA in #308
• [Fix] Skip git operation if config is of empty object by @hengxian-jiang in #314
• [integrate-2098] Upload CSV to supabase storage by @KangJingA in #274
• [Analyze-2063] Resolve SCHEMA_DIRECT_CONN for trex connections by @brandantck in #276
• [Integrate-2177] Remove notebook failed loading template feedback by @hengxian-jiang in #318
• add hardcoded values for source domain by @SantanM in #302
• [Analyze-2190] Fix ATLAS json import by @brandantck in #319
• Flow to connect to trex sql interface to create cache by @csafreen in #266
• [e2e-test] Add setup feature flags test by @brandantck in #310
• Test case: Dataset creation by @csafreen in #315
• [data-2155] Fixes for hana jwt auth and dc by @alicia-koh in #273
• [Devops-2130] Add R-mlflow to strategus kernel image by @mwaiyee in #281
• Fix dataflow creation and save when git config not set by @hengxian-jiang in #325
• [integrate 2186 ]remove remaining dataflowmgmt routes by @KangJingA in #316
• [Internal - 2162] Verify Chinese translation by @Zhimin-arya in #321
• add gha to update issue dates by @p-hoffmann in #327
• Update update-project-dates.yml by @p-hoffmann in #332
• Update update-project-dates.yml by @p-hoffmann in #333
• [internal 2178] update chat ui by @KangJingA in #323
• [integrate-2159-2158-2157] start kernel and host shiny app by @KangJingA in #270
• Update update-project-dates.yml by @p-hoffmann in #338
• [data-2136] Update data mapping node by @alicia-koh in #330
• Move Cohort Gen and Strategus to Hades flow folder by @csafreen in #317
• fix project update by @p-hoffmann in #342
• fix by @p-hoffmann in #343
• fix gha by @p-hoffmann in #344
• add thirdparty refresh token to flows in prefect input by @SantanM in #300
• [internal-2131] fix json serialization by @SantanM in #320
• Add end-to-end tests for notebook functionality by @csafreen in #306
• Move bookmark to atlas cohort transformation to frontend by @khairul-syazwan in #329
• Jerome ng/1818 Query Filter by @jerome-ng in #226
• Fix popper getting blocked by buttons by @jerome-ng in #339
• Fix cohorts display by @satish-a0 in #341
• Fix dbsvc select dataset by @satish-a0 in #346
• Playwright test case: Researcher logout by @csafreen in #282
• 🌐 Update german translations by @TimWalz in #345
• [Analyze] HTTP Test - remove HDIJS by @LSriragavan in #132
• [internal-1599] kpi dashboard by @SantanM in #278

New Contributors

• @TimWalz made their first contribution in #345
• @LSriragavan made their first contribution in #132

Full Changelog: v0.7.3-beta...v0.8.0-beta