Adding statewide monitoring workflow under data.remote inst/ccmmf #3913
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| legend_year,PFT,CLASS,SUBCLASS,CLASS_desc,SUBCLASS_desc,is_agricultural,harmonized_SUBCLASS,crops_included | ||
| 2016,row,G,1,Grain and hay crops,Barley,TRUE,6,"" | ||
| 2021,row,G,2,Grain and hay crops,Wheat,TRUE,2,"" | ||
| 2016,row,G,3,Grain and hay crops,Oats,TRUE,6,"" | ||
| 2021,row,G,6,Grain and hay crops,Miscellaneous grain and hay,TRUE,6,"Barley, cover crops, forage mixes, mixed grain and hay, oats, rye, triticale, vetch" | ||
| 2016,row,G,7,Grain and hay crops,Mixed grain and hay,TRUE,6,"" | ||
| 2021,row,G,**,Grain and hay crops,(no subclass),TRUE,**,"" | ||
| 2021,rice,R,1,Rice,Rice,TRUE,1,"" | ||
| 2021,rice,R,2,Rice,Wild rice,TRUE,2,"" | ||
| 2021,rice,R,**,Rice,(no subclass),TRUE,**,"" | ||
| 2021,row,F,1,Field crops,Cotton,TRUE,1,"" | ||
| 2021,row,F,2,Field crops,Safflower,TRUE,2,"" | ||
| 2016,row,F,3,Field crops,Flax,TRUE,11,"" | ||
| 2016,row,F,4,Field crops,Hops,TRUE,11,"" | ||
| 2021,row,F,5,Field crops,Sugar beets,TRUE,5,"" | ||
| 2016,row,F,6,Field crops,Corn (field & sweet),TRUE,16,"" | ||
| 2016,row,F,7,Field crops,Grain sorghum,TRUE,16,"" | ||
| 2016,row,F,8,Field crops,Sudan,TRUE,16,"" | ||
| 2016,row,F,9,Field crops,Castor beans,TRUE,11,"" | ||
| 2021,row,F,10,Field crops,Beans (dry),TRUE,10,"Blackeye bean, castor bean, common bean (kidney, pinto, black), garbanzo bean, lima bean" | ||
| 2021,row,F,11,Field crops,Miscellaneous field,TRUE,11,"Flax, hemp, hops, horseradish, millet, mint, quinoa, sugarcane, mixed field crops; former F3 F4 F9 F14 F15" | ||
| 2021,row,F,12,Field crops,Sunflowers,TRUE,12,"" | ||
| 2016,row,F,13,Field crops,Hybrid sorghum/sudan,TRUE,16,"" | ||
| 2016,row,F,14,Field crops,Millet,TRUE,11,"" | ||
| 2016,row,F,15,Field crops,Sugar cane,TRUE,11,"" | ||
| 2021,row,F,16,Field crops,"Corn, Sorghum or Sudan (grouped for RS only)",TRUE,16,"Corn (field and sweet), hybrid sorghum/sudan, sorghum, sudan grass; former F6 F7 F8 F13" | ||
| 2021,row,F,**,Field crops,(no subclass),TRUE,**,"" | ||
| 2021,hay,P,1,Pasture,Alfalfa and alfalfa mixtures,TRUE,1,"Alfalfa, alfalfa mixtures, clover; former P2" | ||
| 2016,hay,P,2,Pasture,Clover,TRUE,1,"" | ||
| 2021,hay,P,3,Pasture,Mixed pasture,TRUE,3,"" | ||
| 2021,hay,P,4,Pasture,Native pasture,TRUE,4,"" | ||
| 2021,hay,P,5,Pasture,Induced high water table native pasture,TRUE,5,"" | ||
| 2021,hay,P,6,Pasture,Miscellaneous grasses,TRUE,6,"Bermuda grass, forage grass, kleingrass, ryegrass, teff; former P8 P9 P10" | ||
| 2021,hay,P,7,Pasture,Turf farms,TRUE,7,"" | ||
| 2016,hay,P,8,Pasture,Bermuda grass,TRUE,6,"" | ||
| 2016,hay,P,9,Pasture,Rye grass,TRUE,6,"" | ||
| 2016,hay,P,10,Pasture,Klein grass,TRUE,6,"" | ||
| 2021,hay,P,**,Pasture,(no subclass),TRUE,**,"" | ||
| 2016,row,T,1,"Truck, nursery, and berry crops",Artichokes,TRUE,18,"" | ||
| 2016,row,T,2,"Truck, nursery, and berry crops",Asparagus,TRUE,18,"" | ||
| 2016,row,T,3,"Truck, nursery, and berry crops",Beans (green),TRUE,18,"" | ||
| 2021,row,T,4,"Truck, nursery, and berry crops",Cole crops (mixture of 22-25),TRUE,4,"Broccoli, broccolini, Brussels sprouts, cabbage, cauliflower, collard, kale, kohlrabi, mixed cole crops; former T22-T25" | ||
| 2021,row,T,6,"Truck, nursery, and berry crops",Carrots,TRUE,6,"" | ||
| 2016,row,T,7,"Truck, nursery, and berry crops",Celery,TRUE,18,"" | ||
| 2016,row,T,8,"Truck, nursery, and berry crops",Lettuce (all types),TRUE,30,"" | ||
| 2021,row,T,9,"Truck, nursery, and berry crops","Melons, squash, cucumbers",TRUE,9,"Cantaloupe, cucumber, gourd, honeydew, melon, pumpkin, spaghetti squash, squash, watermelon, yellow squash, zucchini, mixed cucurbits" | ||
| 2021,row,T,10,"Truck, nursery, and berry crops",Onions & garlic,TRUE,10,"" | ||
| 2016,row,T,11,"Truck, nursery, and berry crops",Peas,TRUE,18,"" | ||
| 2021,row,T,12,"Truck, nursery, and berry crops",Potatoes,TRUE,12,"" | ||
| 2021,row,T,13,"Truck, nursery, and berry crops",Sweet potatoes,TRUE,13,"" | ||
| 2016,row,T,14,"Truck, nursery, and berry crops",Spinach,TRUE,30,"" | ||
| 2016,row,T,15,"Truck, nursery, and berry crops",Tomatoes (processing),TRUE,32,"" | ||
| 2021,row,T,16,"Truck, nursery, and berry crops","Flowers, nursery, Christmas trees",TRUE,16,"Cannabis, Christmas trees, cut flowers, lavender, Mexican fan palm, ornamental nursery, crop transplant nursery, tree nursery" | ||
| 2016,row,T,17,"Truck, nursery, and berry crops",Mixed (>=4 crops),TRUE,18,"" | ||
| 2021,row,T,18,"Truck, nursery, and berry crops",Miscellaneous truck,TRUE,18,"Artichoke, Asian leafy vegetables, asparagus, basil, beet, bok choy, broccoli rabe, celery, chard, Chinese cabbage, chives, cilantro, eggplant, fennel, green bean, leek, lemongrass, okra, other herbs, parsley, parsnip, pea, radish, tomatillo, turnip, mixed truck; former T1 T2 T3 T7 T11 T17 T29" | ||
| 2021,woody,T,19,"Truck, nursery, and berry crops",Bush berries,TRUE,19,"" | ||
| 2021,row,T,20,"Truck, nursery, and berry crops",Strawberries,TRUE,20,"" | ||
| 2021,row,T,21,"Truck, nursery, and berry crops",Peppers,TRUE,21,"" | ||
| 2016,row,T,22,"Truck, nursery, and berry crops",Broccoli,TRUE,4,"" | ||
| 2016,row,T,23,"Truck, nursery, and berry crops",Cabbage,TRUE,4,"" | ||
| 2016,row,T,24,"Truck, nursery, and berry crops",Cauliflower,TRUE,4,"" | ||
| 2016,row,T,25,"Truck, nursery, and berry crops",Brussels sprouts,TRUE,4,"" | ||
| 2016,row,T,26,"Truck, nursery, and berry crops",Tomatoes (market),TRUE,32,"" | ||
| 2021,row,T,27,"Truck, nursery, and berry crops",Greenhouse,TRUE,27,"" | ||
| 2016,woody,T,28,"Truck, nursery, and berry crops",Blueberries,TRUE,19,"" | ||
| 2016,row,T,29,"Truck, nursery, and berry crops",Asian leafy vegetables,TRUE,18,"" | ||
| 2021,row,T,30,"Truck, nursery, and berry crops",Lettuce or leafy greens (grouped for RS only),TRUE,30,"Arugula, leaf lettuce, head lettuce, shaved lettuce, spinach, spring mix; former T8 T14" | ||
| 2016,row,T,31,"Truck, nursery, and berry crops",Potato or sweet potato (grouped for RS only),TRUE,31,"" | ||
| 2021,row,T,32,"Truck, nursery, and berry crops",Tomatoes,TRUE,32,"Fresh market tomato, processing tomato; former T15 T26" | ||
| 2021,row,T,**,"Truck, nursery, and berry crops",(no subclass),TRUE,**,"" | ||
| 2021,woody,D,1,Deciduous fruits and nuts,Apples,TRUE,1,"" | ||
| 2021,woody,D,2,Deciduous fruits and nuts,Apricots,TRUE,2,"" | ||
| 2021,woody,D,3,Deciduous fruits and nuts,Cherries,TRUE,3,"" | ||
| 2021,woody,D,5,Deciduous fruits and nuts,Peaches and nectarines,TRUE,5,"" | ||
| 2021,woody,D,6,Deciduous fruits and nuts,Pears,TRUE,6,"" | ||
| 2021,woody,D,7,Deciduous fruits and nuts,Plums,TRUE,7,"" | ||
| 2021,woody,D,8,Deciduous fruits and nuts,Prunes,TRUE,8,"" | ||
| 2016,woody,D,9,Deciduous fruits and nuts,Figs,TRUE,10,"" | ||
| 2021,woody,D,10,Deciduous fruits and nuts,Miscellaneous deciduous,TRUE,10,"Chestnuts, figs, hazelnuts, jujube, persimmons, mixed deciduous; former D9 D11" | ||
| 2016,woody,D,11,Deciduous fruits and nuts,Mixed deciduous,TRUE,10,"" | ||
| 2021,woody,D,12,Deciduous fruits and nuts,Almonds,TRUE,12,"" | ||
| 2021,woody,D,13,Deciduous fruits and nuts,Walnuts,TRUE,13,"" | ||
| 2021,woody,D,14,Deciduous fruits and nuts,Pistachios,TRUE,14,"" | ||
| 2021,woody,D,15,Deciduous fruits and nuts,Pomegranates,TRUE,15,"" | ||
| 2016,woody,D,16,Deciduous fruits and nuts,Plums/Prunes/Apricots (grouped for RS),TRUE,16,"" | ||
| 2021,woody,D,17,Deciduous fruits and nuts,Pecans,TRUE,17,"" | ||
| 2021,woody,D,**,Deciduous fruits and nuts,(no subclass),TRUE,**,"" | ||
| 2016,woody,C,1,Citrus and subtropical,Grapefruit,TRUE,**,"" | ||
| 2016,woody,C,2,Citrus and subtropical,Lemons,TRUE,**,"" | ||
| 2016,woody,C,3,Citrus and subtropical,Oranges,TRUE,**,"" | ||
| 2021,woody,C,4,Citrus and subtropical,Dates,TRUE,4,"" | ||
| 2021,woody,C,5,Citrus and subtropical,Avocados,TRUE,5,"" | ||
| 2021,woody,C,6,Citrus and subtropical,Olives,TRUE,6,"" | ||
| 2021,woody,C,7,Citrus and subtropical,Miscellaneous subtropical fruits,TRUE,7,"Cactus, cherimoya, guava, jojoba, mango, Mexican hawthorn, moringa, mixed subtropical fruits; former C9 C11" | ||
| 2021,woody,C,8,Citrus and subtropical,Kiwis,TRUE,8,"" | ||
| 2016,woody,C,9,Citrus and subtropical,Jojoba,TRUE,7,"" | ||
| 2021,woody,C,10,Citrus and subtropical,Eucalyptus,TRUE,10,"" | ||
| 2016,woody,C,11,Citrus and subtropical,Mixed subtropical fruits,TRUE,7,"" | ||
| 2021,woody,C,**,Citrus and subtropical,(no subclass),TRUE,**,"Clementine, grapefruit, kumquat, lemon, lime, orange, mixed citrus, pomelo, tangelo, tangerine; former C1 C2 C3" | ||
| 2016,woody,V,1,Vineyards,Table grapes,TRUE,**,"" | ||
| 2016,woody,V,2,Vineyards,Wine grapes,TRUE,**,"" | ||
| 2016,woody,V,3,Vineyards,Raisin grapes,TRUE,**,"" | ||
| 2021,woody,V,**,Vineyards,Vineyard (subclass not specified in tabular data),TRUE,**,"Raisin grapes, table grapes, wine grapes; former V1 V2 V3" | ||
| 2021,woody,YP,**,Young Perennial,(no subclass),TRUE,**,"" | ||
| 2021,other,X,**,Unclassified fallow,(no subclass),TRUE,**,"" | ||
| 2021,other,I,1,Idle,Land not cropped (recently cropped),TRUE,1,"" | ||
| 2016,other,I,2,Idle,New lands prepped for production,TRUE,1,"" | ||
| 2021,other,I,4,Idle,Long-term idle (>=4 years),TRUE,4,"" | ||
| 2021,other,I,**,Idle,(no subclass),TRUE,**,"" | ||
| 2021,noncrop,S,1,Semi-agricultural & incidental to agriculture,Farmsteads (with residence),FALSE,1,"" | ||
| 2021,noncrop,S,2,Semi-agricultural & incidental to agriculture,Livestock feed lot operations,FALSE,2,"" | ||
| 2021,noncrop,S,3,Semi-agricultural & incidental to agriculture,Dairies,FALSE,3,"" | ||
| 2021,noncrop,S,4,Semi-agricultural & incidental to agriculture,Poultry farms,FALSE,4,"" | ||
| 2021,noncrop,S,5,Semi-agricultural & incidental to agriculture,Farmsteads (without residence),FALSE,5,"" | ||
| 2021,noncrop,S,6,Semi-agricultural & incidental to agriculture,Miscellaneous semi-agricultural,FALSE,6,"" | ||
| 2021,noncrop,U,**,Urban (residential commercial industrial unsegregated),(no subclass),FALSE,**,"" | ||
| 2021,noncrop,UR,1,Urban residential,Single family dwellings (low density),FALSE,1,"" | ||
| 2021,noncrop,UR,2,Urban residential,Single family dwellings (higher density),FALSE,2,"" | ||
| 2021,noncrop,UR,3,Urban residential,"Multi-family (apartments, condos, etc.)",FALSE,3,"" | ||
| 2021,noncrop,UR,4,Urban residential,Trailer courts,FALSE,4,"" | ||
| 2021,noncrop,UC,1,Urban commercial,"Offices, retailers",FALSE,1,"" | ||
| 2021,noncrop,UC,2,Urban commercial,Hotels,FALSE,2,"" | ||
| 2021,noncrop,UC,3,Urban commercial,Motels,FALSE,3,"" | ||
| 2021,noncrop,UC,4,Urban commercial,"Recreation vehicle parking, campsites",FALSE,4,"" | ||
| 2021,noncrop,UC,5,Urban commercial,"Institutions (hospitals, prisons, etc.)",FALSE,5,"" | ||
| 2021,noncrop,UC,6,Urban commercial,Schools,FALSE,6,"" | ||
| 2021,noncrop,UC,7,Urban commercial,"Theaters, churches, stadiums, amusement",FALSE,7,"" | ||
| 2021,noncrop,UC,8,Urban commercial,Miscellaneous high-water use commercial,FALSE,8,"" | ||
| 2021,noncrop,UI,1,Urban industrial,"Manufacturing, assembling, processing",FALSE,1,"" | ||
| 2021,noncrop,UI,2,Urban industrial,"Extractive industries (oil, quarries, etc.)",FALSE,2,"" | ||
| 2021,noncrop,UI,3,Urban industrial,Storage and distribution,FALSE,3,"" | ||
| 2021,noncrop,UI,6,Urban industrial,Saw mills,FALSE,6,"" | ||
| 2021,noncrop,UI,7,Urban industrial,Oil refineries,FALSE,7,"" | ||
| 2021,noncrop,UI,8,Urban industrial,Paper mills,FALSE,8,"" | ||
| 2021,noncrop,UI,9,Urban industrial,Meat packing plants,FALSE,9,"" | ||
| 2021,noncrop,UI,10,Urban industrial,Steel/aluminum mills,FALSE,10,"" | ||
| 2021,noncrop,UI,11,Urban industrial,"Food processing (canning, etc.)",FALSE,11,"" | ||
| 2021,noncrop,UI,12,Urban industrial,Miscellaneous high-water use industrial,FALSE,12,"" | ||
| 2021,noncrop,UI,13,Urban industrial,Sewage treatment plants,FALSE,13,"" | ||
| 2021,noncrop,UI,14,Urban industrial,"Waste sites (dumps, landfills, hazardous)",FALSE,14,"" | ||
| 2021,noncrop,UI,15,Urban industrial,"Wind farms, solar farms",FALSE,15,"" | ||
| 2021,noncrop,UL,1,Urban landscape,Lawn area irrigated,FALSE,1,"" | ||
| 2021,noncrop,UL,2,Urban landscape,Golf course irrigated,FALSE,2,"" | ||
| 2021,noncrop,UL,3,Urban landscape,Ornamental landscape irrigated,FALSE,3,"" | ||
| 2021,noncrop,UL,4,Urban landscape,Cemeteries irrigated,FALSE,4,"" | ||
| 2021,noncrop,UL,5,Urban landscape,Cemeteries not irrigated,FALSE,5,"" | ||
| 2021,noncrop,UV,1,Urban vacant,"Unpaved areas, vacant lots",FALSE,1,"" | ||
| 2021,noncrop,UV,3,Urban vacant,Railroad right of way,FALSE,3,"" | ||
| 2021,noncrop,UV,4,Urban vacant,"Paved areas, parking lots",FALSE,4,"" | ||
| 2021,noncrop,UV,6,Urban vacant,Airport runways,FALSE,6,"" | ||
| 2021,noncrop,UV,7,Urban vacant,Non-developable urban land,FALSE,7,"" | ||
| 2021,noncrop,NC,**,Native classes unsegregated,(no subclass),FALSE,**,"" | ||
| 2021,noncrop,NV,1,Native vegetation,Grassland,FALSE,1,"" | ||
| 2021,noncrop,NV,2,Native vegetation,Light brush,FALSE,2,"" | ||
| 2021,noncrop,NV,3,Native vegetation,Medium brush,FALSE,3,"" | ||
| 2021,noncrop,NV,4,Native vegetation,Heavy brush,FALSE,4,"" | ||
| 2021,noncrop,NV,5,Native vegetation,Brush and timber,FALSE,5,"" | ||
| 2021,noncrop,NV,6,Native vegetation,Forest,FALSE,6,"" | ||
| 2021,noncrop,NV,7,Native vegetation,Oak woodland,FALSE,7,"" | ||
| 2021,noncrop,NR,1,Native riparian vegetation,"Marsh lands, tules, sedges",FALSE,1,"" | ||
| 2021,noncrop,NR,2,Native riparian vegetation,Natural high-water table meadow,FALSE,2,"" | ||
| 2021,noncrop,NR,3,Native riparian vegetation,Trees/shrubs streamside vegetation,FALSE,3,"" | ||
| 2021,noncrop,NR,4,Native riparian vegetation,Seasonal duck marsh,FALSE,4,"" | ||
| 2021,noncrop,NR,5,Native riparian vegetation,Permanent duck marsh,FALSE,5,"" | ||
| 2021,noncrop,NW,1,Water surface,River or stream,FALSE,1,"" | ||
| 2021,noncrop,NW,2,Water surface,Irrigation/urban water channels,FALSE,2,"" | ||
| 2021,noncrop,NW,3,Water surface,Drainage water channels,FALSE,3,"" | ||
| 2021,noncrop,NW,4,Water surface,"Freshwater lake, reservoir, pond",FALSE,4,"" | ||
| 2021,noncrop,NW,5,Water surface,Brackish/saline water,FALSE,5,"" | ||
| 2021,noncrop,NW,6,Water surface,Wastewater pond,FALSE,6,"" | ||
| 2021,noncrop,NW,7,Water surface,Paved flood channels (urban),FALSE,7,"" | ||
| 2021,noncrop,NB,1,Barren and wasteland,Dry stream channels,FALSE,1,"" | ||
| 2021,noncrop,NB,2,Barren and wasteland,Mine tailings,FALSE,2,"" | ||
| 2021,noncrop,NB,3,Barren and wasteland,Barren land,FALSE,3,"" | ||
| 2021,noncrop,NB,4,Barren and wasteland,Salt flats,FALSE,4,"" | ||
| 2021,noncrop,NB,5,Barren and wasteland,Sand dunes,FALSE,5,"" | ||
| 2021,noncrop,NS,**,Not surveyed,(no subclass),FALSE,**,"" | ||
| 2021,noncrop,E,**,Entry denied,(no subclass),FALSE,**,"" | ||
| 2021,noncrop,Z,**,Outside study area,(no subclass),FALSE,**,"" |
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| # CCMMF statewide monitoring (`inst/ccmmf`) | ||
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| California LandIQ → phenology → management-event pipeline scripts for PEcAn. | ||
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| **Documentation (start here):** [documentation/README.md](documentation/README.md) | ||
| **Environment setup:** [documentation/sessions/00-environment.md](documentation/sessions/00-environment.md) | ||
| **PR:** https://github.com/PecanProject/pecan/pull/3913 | ||
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Member
There was a problem hiding this comment. not sure why the documentation would reference a PR. Drop |
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| ## Layout | ||
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| | Path | Role | | ||
| |------|------| | ||
| | `documentation/` | Stakeholder sessions + `pipeline.md` + `ccmmf_env.example.sh` | | ||
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Member
There was a problem hiding this comment. Expand every single "role". Even knowing how this workflow works, I find the descriptions overly terse and cryptic. Any time you read/write documentation or tutorials, you have to put yourself in the shoes of someone who has never heard of what you're doing and is looking at this project for the first time |
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| | `landiq-gapfill/` | Crop/ADOY gap-fill → LandIQ v4.1.2 product | | ||
| | `mslsp-extract/` | MSLSP parcel extract (needs sibling `hls/_lib`) | | ||
| | `ndti-extract/` | NDTI parcel extract (needs sibling `hls/_lib`) | | ||
| | `hls/` | Parcel–tile map + shared tilewise `_lib` | | ||
| | `phenology/` | Match LandIQ↔MSLSP + date gap-fill | | ||
| | `traits/` | Planting/harvest trait lookups | | ||
| | `events/` | Statewide phenology/planting/harvest/tillage events | | ||
| | `tillage/` | NDTI tillage metrics helpers | | ||
| | `LandIQ_cropCode_lookup_table.csv` | Crop metadata / PFT | | ||
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| ## Quick start | ||
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| ```bash | ||
| export CCMMF_CODE="$(pwd)/modules/data.remote/inst/ccmmf" # from PEcAn clone | ||
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Member
There was a problem hiding this comment. don't start a "quick start" with a chunk of code that has zero explanation of what it does or why it's being run. I also think there's a high likelihood this particular chunk of code will fail as (a) if you're looking at this script then the folder it is in is the PWD, not the pecan root and (b) the user probably doesn't actually want to copy this script to their home directory, they probably want to keep it inside pecan or some sort of project directory. |
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| cp "$CCMMF_CODE/documentation/ccmmf_env.example.sh" ~/ccmmf_env.sh | ||
| # edit paths, then: | ||
| source ~/ccmmf_env.sh | ||
| ``` | ||
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| Set `HLS_SHARED_LIB=$CCMMF_CODE/hls/_lib` if auto-detection fails. Upstream HLS/MSLSP | ||
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| NetCDF production: [HLS_Phenology](https://github.com/mrinareddy/HLS_Phenology). | ||
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| # CCMMF monitoring pipeline - documentation | ||
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| **You are here to process a new LandIQ year.** | ||
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Member
There was a problem hiding this comment. What's LandIQ? what's a LandIQ year? Why would I want to process one and what does that mean? |
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| This training walkthrough adds **2024** and re-runs **2023** (the year pair). | ||
| You work on **your own Linux cloud / HPC** (not BU SCC). | ||
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Member
There was a problem hiding this comment. This statement is only meaningful to people who ARE working on the BU SCC. No one else will know what that is or consider that the "default" |
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| | Variable | Value in this training | | ||
| |----------|-------------------------| | ||
| | `TARGET_YEAR` | **2024** (new CADWR / LandIQ release) | | ||
| | `PRIOR_YEAR` | **2023** (re-gap-fill, rematch, rebuild events with the new series) | | ||
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| When CADWR releases a later year, use the same steps with | ||
| `TARGET_YEAR=<new>` and `PRIOR_YEAR=<new-1>`. | ||
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| **Code on GitHub:** [PR #3913](https://github.com/PecanProject/pecan/pull/3913) - | ||
| branch `feature/ccmmf-statewide-monitoring-inst` -> | ||
| `modules/data.remote/inst/ccmmf/`. | ||
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| --- | ||
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| ## Start here (read in order) | ||
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| | Step | Open | You will | | ||
| |-----:|------|----------| | ||
| | 0 | [sessions/00-environment.md](sessions/00-environment.md) | Clone code, install R (+ pixi for Python), create `$CCMMF_ROOT`, `source` your env file | | ||
| | - | [ccmmf_env.example.sh](ccmmf_env.example.sh) | Copy to `$CCMMF_ROOT/ccmmf_env.sh` and set paths / years | | ||
| | 1 | [sessions/01-landiq.md](sessions/01-landiq.md) | Download LandIQ **2024**, harmonize geometry, gap-fill **2023,2024** | | ||
| | spine | [pipeline.md](pipeline.md) | Full year-pair checklist after LandIQ (HLS -> MSLSP/NDTI -> match -> events) | | ||
| | 2 | [sessions/02-phenology.md](sessions/02-phenology.md) | Phenology extract, match, planting/harvest events for **2023 and 2024** | | ||
| | 3 | [sessions/03-tillage-fertilizer.md](sessions/03-tillage-fertilizer.md) | NDTI tillage (opt-in); fert notes | | ||
| | 4 | [sessions/04-irrigation.md](sessions/04-irrigation.md) | Irrigation (parallel; same parcels) | | ||
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| **Two languages, two repos** | ||
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| | Part | Language / tool | Repo | | ||
| |------|-----------------|------| | ||
| | Harmonize LandIQ parcels | **Python** via **pixi** | [ccmmf/cadwr-landuse](https://github.com/ccmmf/cadwr-landuse) (`feature/auto-discover-landiq-years` until on `main`) | | ||
| | Gap-fill, extract, match, events | **R** (`Rscript` / `run_*.sh`) | PEcAn `inst/ccmmf/` (this PR) | | ||
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| Session write-ups are the training path. Package READMEs next to the code | ||
| (`landiq-gapfill/`, `mslsp-extract/`, …) are optional detail (flags, QC) linked | ||
| from sessions - not a second curriculum. | ||
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| --- | ||
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| ## What "done" looks like for this training | ||
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| After Sessions 0-2 (core): | ||
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| 1. LandIQ **2024** is in your harmonized crop table and gap-filled product. | ||
| 2. **2023** and **2024** are gap-filled in `LandIQ-harmonized-v4.1.2` (or your writable copy). | ||
| 3. Matched MSLSP + planting/harvest/phenology events exist for **both** years. | ||
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| Lab note: a historical **2016-2023** product already exists on BU SCC. Your job in | ||
| training is the **year-pair update**, not rebuilding all history from scratch. | ||
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If I was looking in this folder for the first time, how would I know what this is? You need to start more broadly and explain yourself. Also, I don't think it's fair to assume that the ONLY thing you'll end up putting in the data.remote/insts/ccmmf folder will be phenology