Feature/seqkit filtering dev#158
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…w_schema.json files
- Add min_contig_length parameter with default 5000 - Add seqkit module for contig filtering - Update schema and documentation - Integrate filter in prepare_assembly workflow
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Added seqkit-based contig length filtering with default 5000bp
Updated schema and documentation
Integrated filter in the prepare_assembly workflow
All version numbers are in sync with the main branch