Package refactor and feature addition

.github/ISSUE_TEMPLATE/Bug_report.yml

@@ -0,0 +1,39 @@
+name: Bug Report
+description: Create a report to help us improve mmu
+title: "BUG: <Please write a comprehensive title after the 'BUG: ' prefix>"
+
+body:
+  - type: markdown
+    attributes:
+      value: Thank you for taking the time to file a bug report.
+
+  - type: textarea
+    attributes:
+      label: Describe your issue.
+    validations:
+      required: true
+
+  - type: textarea
+    attributes:
+      label: Reproducing Code Example
+      description: Paste the reproducing code and it will be rendered as a code block.
+      render: python
+    validations:
+      required: true
+
+  - type: textarea
+    attributes:
+      label: Error message
+      description: If any, paste the full traceback or error output.
+      render: shell
+    validations:
+      required: true
+
+  - type: textarea
+    attributes:
+      label: MMU/NumPy/SciPy/Python version and system information
+      description: Run and paste output from `import platform, sys, mmu, numpy, scipy; print(platform.platform()); print(mmu.__version__, numpy.__version__, scipy.__version__, sys.version_info)`.
+      render: shell
+    validations:
+      required: true
+

.github/workflows/asan.yml

@@ -1,45 +1,31 @@
 name: Asan
 
 on:
-  pull_request:
-    branches:
-      - stable
-      - unstable
   workflow_dispatch:
+  pull_request:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
 
 defaults:
   run:
     shell: bash
 
 jobs:
-  pre_job:
-    # continue-on-error: true # Uncomment once integration is finished
-    runs-on: ubuntu-latest
-    # Map a step output to a job output
-    outputs:
-      should_skip: ${{ steps.skip_check.outputs.should_skip }}
-    steps:
-      - id: skip_check
-        uses: fkirc/skip-duplicate-actions@master
-        with:
-          # All of these options are optional, so you can remove them if you are happy with the defaults
-          cancel_others: 'true'
-          do_not_skip: '["pull_request", "workflow_dispatch", "schedule"]'
   build:
     name: Asan
-    needs: pre_job
-    if: ${{ needs.pre_job.outputs.should_skip != 'true' }}
     runs-on: ubuntu-latest
 
     steps:
       # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v6
         with:
           submodules: false
 
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v6
         with:
-          python-version: '3.10'
+          python-version: '3.12'
 
       - name: Install python packages
         run: |

.github/workflows/linux.yml

@@ -1,77 +1,34 @@
 name: Linux
 
-defaults:
-  run:
-    shell: bash
-
 on:
   workflow_dispatch:
-  pull_request:
-    branches:
-      - stable
-      - unstable
-  push:
-    branches:
-      - stable
   schedule:
     - cron: '0 23 * * 1'
 
 jobs:
-  pre_job:
-    # continue-on-error: true # Uncomment once integration is finished
-    runs-on: ubuntu-latest
-    # Map a step output to a job output
-    outputs:
-      should_skip: ${{ steps.skip_check.outputs.should_skip }}
-    steps:
-      - id: skip_check
-        uses: fkirc/skip-duplicate-actions@master
-        with:
-          # All of these options are optional, so you can remove them if you are happy with the defaults
-          cancel_others: 'true'
-          do_not_skip: '["pull_request", "workflow_dispatch", "schedule"]'
   tests:
-    runs-on: ${{ matrix.config.os }}
-    name: ${{ matrix.config.name }} Python ${{ matrix.python-version }}
-    needs: pre_job
-    if: ${{ needs.pre_job.outputs.should_skip != 'true' }}
+    runs-on: ubuntu-latest
+    name: Linux CPython ${{ matrix.python-version }}
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"]
-        config: 
-        - {
-            name: "Ubuntu (Clang-14)",
-            os: ubuntu-latest,
-            build_type: "Release",
-            cc: "clang-14",
-            cxx: "clang++-14",
-            generators: "Ninja",
-            target: "all"
-          }
-        - {
-            name: "Ubuntu (GCC-11)",
-            os: ubuntu-latest,
-            build_type: "Release",
-            cc: "gcc-11",
-            cxx: "g++-11",
-            generators: "Ninja",
-            target: "all"
-          }
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13", "3.14"]
+
     steps:
-    - uses: actions/checkout@v3
+    - uses: actions/checkout@v6
       with:
         submodules: true
 
-    - uses: actions/setup-python@v4
+    - uses: actions/setup-python@v6
       with:
         python-version: ${{ matrix.python-version }}
 
-    - name: Add requirements
-      run: python -m pip install --upgrade pip wheel setuptools pytest
-
     - name: Build and install
-      run: CXX=${{ matrix.config.cxx }} CMAKE_ARGS="-DMMU_ENABLE_INTERNAL_TESTS=ON -DMMU_CICD_MODE=ON" pip install --verbose .
+      run: |
+        python -m pip install --upgrade pip
+        CMAKE_ARGS="-DMMU_CICD_MODE=ON -DMMU_ENABLE_INTERNAL_TESTS=ON" python -m pip install ".[test]" --verbose
 
-    - name: Unit test
-      run: pytest tests
+    - name: Test
+      run: |
+        cd tests
+        pytest -vv