Chore/update dependencies

.github/actions/ci-setup/action.yml

@@ -2,44 +2,44 @@ name: CI setup
 
 inputs:
   os:
-    description: 'OS'
+    description: "OS"
     required: true
   python-version:
-    description: 'The python version to install and setup'
+    description: "The python version to install and setup"
     required: true
-
+  poetry-version:
+    description: "The poetry version to install and setup"
+    default: "2.2.1"
 
 runs:
   using: composite
   steps:
-     - name: Set up Python ${{ inputs.python-version }}
-       uses: actions/setup-python@v4
-       with:
-         python-version: ${{ inputs.python-version }}
-     - name: Install Poetry
-       uses: snok/install-poetry@v1
-       with:
-         virtualenvs-create: true
-         virtualenvs-in-project: true
-         version: "2.1.4"
-     - name: add poetry to windows path
-       if: runner.os == 'Windows'
-       run: echo "C:/Users/runneradmin/.local/bin" >> $GITHUB_PATH
-       shell: bash
-     - name: add dynamic versioning
-       run: poetry self add "poetry-dynamic-versioning[plugin]"
-       shell: bash
-     - name: Cache Packages
-       id: poetry-cache
-       uses: actions/cache@v3
-       with:
-         path: |
-           .venv
-           poetry.lock
-         key: poetry-${{ inputs.os }}-${{ inputs.python-version }}-${{ hashFiles('**/poetry.lock') }}-${{ hashFiles('.github/workflows/*.yml') }}
-     - name: Install dependencies
-       env:
-          SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL: true
-       if: steps.poetry-cache.outputs.cache-hit != 'true'
-       run: poetry install
-       shell: bash
+    - name: Set up Python ${{ inputs.python-version }}
+      uses: actions/setup-python@v6
+      with:
+        python-version: ${{ inputs.python-version }}
+    - name: Install Poetry ${{ inputs.poetry-version }}
+      uses: snok/install-poetry@76e04a911780d5b312d89783f7b1cd627778900a
+      with:
+        virtualenvs-create: true
+        virtualenvs-in-project: true
+        version: ${{ inputs.poetry-version }}
+    - name: add poetry to windows path
+      if: runner.os == 'Windows'
+      run: echo "C:/Users/runneradmin/.local/bin" >> $GITHUB_PATH
+      shell: bash
+    - name: add dynamic versioning
+      run: poetry self add "poetry-dynamic-versioning[plugin]"
+      shell: bash
+    - name: Cache Packages
+      id: poetry-cache
+      uses: actions/cache@v4
+      with:
+        path: |
+          .venv
+          poetry.lock
+        key: poetry-${{ inputs.os }}-${{ inputs.python-version }}-${{ hashFiles('**/poetry.lock') }}-${{ hashFiles('.github/workflows/*.yml') }}
+    - name: Install dependencies
+      if: steps.poetry-cache.outputs.cache-hit != 'true'
+      run: poetry sync --no-interaction
+      shell: bash

.github/workflows/ci.yml

@@ -0,0 +1,255 @@
+name: CI/CD
+on: push
+permissions:
+  contents: write
+
+jobs:
+  prepare-linux:
+    name: "🐧 Prepare Linux"
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13", "3.14"]
+        os-version: ["ubuntu-latest"]
+      fail-fast: false
+    runs-on: ${{ matrix.os-version }}
+    steps:
+      - uses: actions/checkout@v5
+      - name: Setup CI
+        uses: "./.github/actions/ci-setup"
+        with:
+          os: ${{ matrix.os-version }}
+          python-version: ${{ matrix.python-version }}
+
+  prepare-win:
+    name: "🪟 Prepare Windows"
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13", "3.14"]
+        os-version: ["windows-latest"]
+      fail-fast: false
+    runs-on: ${{ matrix.os-version }}
+    steps:
+      - uses: actions/checkout@v5
+      - name: Setup CI
+        uses: "./.github/actions/ci-setup"
+        with:
+          os: ${{ matrix.os-version }}
+          python-version: ${{ matrix.python-version }}
+
+  check-format:
+    name: "🔍 Check Code Format"
+    needs: prepare-linux
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v5
+      - name: Setup CI
+        uses: "./.github/actions/ci-setup"
+        with:
+          os: "ubuntu-latest"
+          python-version: "3.9"
+      - name: check
+        run: |
+          poetry run black --check docs mesh2vec scripts tests
+
+  pylint:
+    name: "🔍 Lint Code"
+    needs: prepare-linux
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v5
+      - name: Setup CI
+        uses: "./.github/actions/ci-setup"
+        with:
+          os: "ubuntu-latest"
+          python-version: "3.9"
+      - name: check
+        run: |
+          poetry run pylint docs/examples mesh2vec scripts tests
+
+  mypy:
+    name: "🔍 Check Code Types"
+    needs: prepare-linux
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v5
+      - name: Setup CI
+        uses: "./.github/actions/ci-setup"
+        with:
+          os: "ubuntu-latest"
+          python-version: "3.9"
+      - name: check
+        run: |
+          poetry run mypy docs/examples mesh2vec scripts tests
+
+  audit:
+    name: "🔍 Audit Dependencies"
+    needs: [prepare-linux, prepare-win]
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13", "3.14"]
+        os-version: ["windows-latest", "ubuntu-latest"]
+      fail-fast: false
+    runs-on: ${{ matrix.os-version }}
+    steps:
+      - uses: actions/checkout@v5
+      - name: Setup CI
+        uses: "./.github/actions/ci-setup"
+        with:
+          os: ${{ matrix.os-version }}
+          python-version: ${{ matrix.python-version }}
+      - name: check
+        run: |
+          poetry run pip-audit
+
+  doctest:
+    name: "🧪 Run Doctests"
+    needs: [prepare-linux, prepare-win]
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13", "3.14"]
+        os-version: ["windows-latest", "ubuntu-latest"]
+      fail-fast: false
+    continue-on-error: ${{ matrix.os-version == 'windows-latest' && (matrix.python-version == '3.13' || matrix.python-version == '3.14') }}
+    runs-on: ${{ matrix.os-version }}
+    steps:
+      - uses: actions/checkout@v5
+      - name: Setup CI
+        uses: "./.github/actions/ci-setup"
+        with:
+          os: ${{ matrix.os-version }}
+          python-version: ${{ matrix.python-version }}
+      - name: test
+        run: |
+          poetry run sphinx-build docs/source build/documentation/ -W -vvv -b doctest
+
+  unit-test:
+    name: "🧪 Run Unit Tests"
+    needs: [prepare-linux, prepare-win]
+    strategy:
+      matrix:
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13", "3.14"]
+        os-version: ["windows-latest", "ubuntu-latest"]
+      fail-fast: false
+    continue-on-error: ${{ matrix.os-version == 'windows-latest' && (matrix.python-version == '3.13' || matrix.python-version == '3.14') }}
+    runs-on: ${{ matrix.os-version }}
+    steps:
+      - uses: actions/checkout@v5
+      - name: Setup CI
+        uses: "./.github/actions/ci-setup"
+        with:
+          os: ${{ matrix.os-version }}
+          python-version: ${{ matrix.python-version }}
+      - name: test
+        run: |
+          poetry run pytest -vv -s --tb=long tests
+
+  build-docs:
+    name: "🧱 Build Documentation"
+    needs: prepare-linux
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v5
+      - name: Setup CI
+        uses: "./.github/actions/ci-setup"
+        with:
+          os: "ubuntu-latest"
+          python-version: "3.13"
+      - name: build docs
+        run: |
+          poetry run sphinx-build docs/source build/documentation/ -W -vvv -b html
+      - name: Store docs
+        uses: actions/upload-artifact@v5
+        with:
+          name: docs
+          path: build/documentation/
+
+  build-wheel:
+    name: "🧱 Build Wheel"
+    needs: prepare-linux
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v5
+      - name: Setup CI
+        uses: "./.github/actions/ci-setup"
+        with:
+          os: "ubuntu-latest"
+          python-version: "3.13"
+      - name: build wheel
+        run: poetry build -f wheel -vvv
+      - name: Store wheel
+        uses: actions/upload-artifact@v5
+        with:
+          name: dist
+          path: dist/
+
+  check-wheel:
+    name: "🔍 Check Wheel"
+    needs: [prepare-linux, build-wheel]
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v5
+      - name: Setup CI
+        uses: "./.github/actions/ci-setup"
+        with:
+          os: "ubuntu-latest"
+          python-version: "3.9"
+      - name: Download wheels
+        uses: actions/download-artifact@v6
+        with:
+          name: dist
+          path: dist/
+      - name: check wheel contents
+        run: poetry run check-wheel-contents dist/
+
+  release-docs:
+    name: "🚀 Release Documentation"
+    if: startsWith(github.ref, 'refs/tags/v')
+    needs:
+      - check-format
+      - audit
+      - pylint
+      - mypy
+      - unit-test
+      - doctest
+      - build-wheel
+      - check-wheel
+      - build-docs
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v5
+      - name: Download docs
+        uses: actions/download-artifact@v6
+        with:
+          name: docs
+          path: build/documentation/
+      - name: Deploy
+        uses: peaceiris/actions-gh-pages@4f9cc6602d3f66b9c108549d475ec49e8ef4d45e
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: ./build/documentation/
+
+  release:
+    name: "🚀 Release"
+    if: startsWith(github.ref, 'refs/tags/v')
+    needs:
+      - check-format
+      - audit
+      - pylint
+      - mypy
+      - unit-test
+      - doctest
+      - build-wheel
+      - check-wheel
+      - build-docs
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v5
+      - name: Download wheels
+        uses: actions/download-artifact@v6
+        with:
+          name: dist
+          path: dist/
+      - name: Publish package to PyPI
+        uses: pypa/gh-action-pypi-publish@ed0c53931b1dc9bd32cbe73a98c7f6766f8a527e
+        with:
+          password: ${{ secrets.PYPI_API_TOKEN }}