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Refresh StiffSDE under v7 stack - #1572

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Refresh StiffSDE under v7 stack#1572
ChrisRackauckas-Claude wants to merge 1 commit into
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ChrisRackauckas-Claude:clean/StiffSDE

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Summary

Local verification of benchmarks/StiffSDE against the v7 stack (OrdinaryDiffEq v7 / SciMLBase v3 / RecursiveArrayTools v4) followed by Manifest refresh.

Verification (Julia 1.11.9, local)

  • Pkg.instantiate() clean — 22 new precompiles, no errors (only a benign save_noise! conflict warning from StochasticDiffEqCore).
  • All 5 .jmd files tangle cleanly via SciMLBenchmarks.weave_file(..., (:script,)): Oval2LongRun, Oval2LongTimes, Oval2Timings, QuadraticStiffness, StochasticHeat.
  • Oval2Timings.jmd ensemble uses the v7 signature: prob_func(prob, ctx) = remake(prob, seed = ctx.i).
  • Refreshed Manifest re-precompiles cleanly; using StochasticDiffEq loads (v7.0.0).

Manifest changes

Notable bumps from Pkg.update():

  • SciMLBase 3.7.1 -> 3.13.0
  • DiffEqBase 7.1.0 -> 7.5.0
  • LinearSolve 3.75.0 -> 3.80.0
  • OrdinaryDiffEqCore 4.0.0 -> 4.2.1
  • OrdinaryDiffEqDifferentiation 3.0.0 -> 3.1.1
  • SciMLOperators 1.17.0 -> 1.21.0
  • SciMLLogging 1.9.1 -> 1.10.1
  • DiffEqDevTools 3.0.0 -> 3.1.0
  • Several minor / patch bumps and JLL refreshes

Project.toml unchanged (all bumps within existing compat bounds).

PR CI run 25912465508 (on amdci1-1) for this folder already succeeded; this PR refreshes the Manifest with the latest registry state and provides local confirmation.

Please ignore until reviewed by @ChrisRackauckas.

Local smoke test passed on Julia 1.11.9: Pkg.instantiate clean,
all 5 .jmd files (Oval2LongRun, Oval2LongTimes, Oval2Timings,
QuadraticStiffness, StochasticHeat) tangle cleanly, Oval2Timings
ensemble uses v7 ctx.i signature, refreshed Manifest precompiles
clean. Notable bumps: SciMLBase 3.7.1->3.13.0, DiffEqBase
7.1.0->7.5.0, LinearSolve 3.75.0->3.80.0, OrdinaryDiffEqCore
4.0.0->4.2.1, SciMLOperators 1.17.0->1.21.0.

Co-Authored-By: Chris Rackauckas <accounts@chrisrackauckas.com>
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