Feat/query memory perf

[St4NNi]

This PR polishes the tool and moves it to a more production ready state.

Changes

• Reworks query/dist execution for lower memory use with chunked matching, deduplicated query hashes, cutoff filtering, bias-weighted containment, and uniform-hash e-values.
• Updates bias-aware sketching and CLI around target/max/unseen fscale calibration, default fscale behavior, and clearer bias-mode reporting/docs.
• Hardens JAM reader/writer/sketch validation against malformed metadata, overflows, invalid inputs, and FASTQ/file-list edge cases.
• Adds K21 bias/hash benchmarking pipeline tooling, SLURM scripts, benchmark coverage, dependency updates, and CI/Docker maintenance.

[codecov]

Codecov Report

❌ Patch coverage is 72.76616% with 573 lines in your changes missing coverage. Please review.
✅ Project coverage is 72.02%. Comparing base (7253622) to head (b1bae03).
⚠️ Report is 29 commits behind head on main.

Files with missing lines	Patch %	Lines
src/cli/handlers.rs	14.42%	178 Missing ⚠️
src/reader.rs	66.50%	131 Missing and 7 partials ⚠️
src/bias.rs	84.63%	85 Missing and 19 partials ⚠️
src/writer.rs	56.37%	48 Missing and 17 partials ⚠️
src/query.rs	88.79%	43 Missing and 11 partials ⚠️
src/lib.rs	0.00%	15 Missing ⚠️
src/sketch.rs	88.03%	11 Missing and 3 partials ⚠️
src/io.rs	87.17%	4 Missing and 1 partial ⚠️

Additional details and impacted files

@@            Coverage Diff            @@
##             main      #11     +/-   ##
=========================================
  Coverage   72.02%   72.02%             
=========================================
  Files          11       11             
  Lines        5655     7082   +1427     
  Branches     5655     7082   +1427     
=========================================
+ Hits         4073     5101   +1028     
- Misses       1454     1814    +360     
- Partials      128      167     +39     

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