Visualize.py with --find_genes

[GiliWolf]

Hi,
Thank you for the very nice visualization script!

I would appreciate it if you could share a brief explanation of the ranking strategy used in the --find_genes option. I was unable to find details about how the different ranking components (e.g., rank_value, rank_abs_diff, rank_deviance, combined_rank) are calculated in your documentation or article.

Additionally, having a few parameters for output control (which files to generate) would be very helpful :)

Thank you,
Gili

[andrewprzh]

Dear @GiliWolf

Tagging @jackfreeman88 as he is the main developer of the visualization part.

However, it seems that he might be busy with other projects.

Best
Andrey