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error: unrecognized arguments: --n_cells auto
documentationImprovements or additions to documentationImprovements or additions to documentationStatus: Open.#424 In ablab/IsoQuant;Questions about improved TSS/poly(A) site detection and --fl_data in IsoQuant 4.0.0
questionFurther information is requestedFurther information is requestedStatus: Open.#423 In ablab/IsoQuant;- Status: Open.#422 In ablab/IsoQuant;
- Status: Open.#412 In ablab/IsoQuant;
Using IsoQuant to create a global transcriptome across multiple long-read single-nuclei RNA-seq PacBio Kinnex samples
questionFurther information is requestedFurther information is requestedStatus: Open.#404 In ablab/IsoQuant;Barcode collision in multi-sample single-cell runs
enhancementNew feature or requestNew feature or requestsingle-cellRelated to single-cell or spatial pipelineRelated to single-cell or spatial pipelineStatus: Open.#388 In ablab/IsoQuant;Running with Parse Biosciences single-cell long-read data using pre-called barcodes
single-cellRelated to single-cell or spatial pipelineRelated to single-cell or spatial pipelineStatus: Open.#387 In ablab/IsoQuant;Question: Using IsoQuant after Iso-Seq preprocessing pipeline for bulk long-read RNA-seq
questionFurther information is requestedFurther information is requestedStatus: Open.#380 In ablab/IsoQuant;Potential adverse effect of small chromosome coverage limit
performanceIssues related to computational perfromanceIssues related to computational perfromancequestionFurther information is requestedFurther information is requestedStatus: Open.#372 In ablab/IsoQuant;Q: best practices?
enhancementNew feature or requestNew feature or requestperformanceIssues related to computational perfromanceIssues related to computational perfromanceStatus: Open.#357 In ablab/IsoQuant;Output transcript usage matrix.
enhancementNew feature or requestNew feature or requestStatus: Open.#352 In ablab/IsoQuant;Visualize.py with --find_genes
visualizerRelates to visualization moduleRelates to visualization moduleStatus: Open.#351 In ablab/IsoQuant;