Feat: add extracted once in the metadata extraction

[imadbourouche]

Context

related issues

• Agents duplication on ontology parsing project-management#644
• https://github.com/ontoportal-lirmm/bioportal_web_ui/issues/1148

Now we introduce the extracted once in the metadata extraction process. This means that if a metadata has the extracted: once we will proceed in these steps:

1. we will check if the latest submission of the ontology contains this metadata
2. if so we will not extracted again and the value will be the same
3. else we will continue in the process of extraction

Why ?
To avoid the duplication of some metadata after curation (ex: Agents)

TO-DO

• Check the complete process (UI, API, model) when deploy it

[jonquet]

For reference: metadata properties descriptions are available at:
https://data.stageportal.lirmm.fr/submission_metadata => for submission
https://data.stageportal.lirmm.fr/ontology_metadata => for ontology

@imadbourouche I can't see the change inside these links right now (no mention of extracted: once).
Might be because StagePortal is currently down?

[imadbourouche]

@jonquet yes it'w weird it's not showing it in the api response. in the file it's changed but in the api it's not showing i'll see what's wrong

[imadbourouche]

@jonquet fixed

[jonquet]

OK I see it now (just changed the name in the text of this PR).
Right now its "once" for all the agents properties.
But it also needs to be "once" for:

• http://data.bioontology.org/submission_metadata/hasDomain
• http://data.bioontology.org/submission_metadata/keywords
  That we also curate and consolidate

In addition I will suggest it also for:

• http://data.bioontology.org/submission_metadata/hasFormalityLevel
• http://data.bioontology.org/submission_metadata/isOfType
• http://data.bioontology.org/submission_metadata/hasLicense
• http://data.bioontology.org/submission_metadata/designedForOntologyTask
• http://data.bioontology.org/submission_metadata/usedOntologyEngineeringTool
• http://data.bioontology.org/submission_metadata/includedInDataCatalog
• http://data.bioontology.org/submission_metadata/accrualPeriodicity
  (those are metadata properties for which we have enforced values (not all of them) but they are barely found in the source file and lets assume that if we edit/curate them in the record, we shall not extract them anymore)