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Input Files + Isolated Script Use

Status: Open.

#47 In akcorut/kGWASflow;

· doylemillard opened on Dec 10, 2025

The environment of kmergwas

Status: Open.

#46 In akcorut/kGWASflow;

· f0llowyourheart opened on Nov 2, 2025

Compatibility issue when using Micromamba instead of Conda for running kgwasflow on HPC cluster

Status: Open.

#44 In akcorut/kGWASflow;

· NouaraAID opened on May 20, 2025

Error in rule generate_results_summary for test dataset

Status: Open.

#43 In akcorut/kGWASflow;

· alexzaccaron opened on Feb 8, 2025

libgfortran3 dependency

Status: Open.

#42 In akcorut/kGWASflow;

· rwhetten opened on Feb 7, 2025

Error in rule spades --No module named 'distutils'-- | Error! The Snakemake workflow aborted.

Status: Open.

#41 In akcorut/kGWASflow;

· Dkyuan opened on Nov 11, 2024

How to run it offline? As my compute server can not link to github or any other web...

Status: Open.

#40 In akcorut/kGWASflow;

· zcl9602 opened on Oct 30, 2024

Error on result/reads/../input_files.txt

Status: Open.

#38 In akcorut/kGWASflow;

· ChristianDina opened on Sep 11, 2024

How to read results/kmers_count/<sample>/kmers_with_strand table

Status: Open.

#37 In akcorut/kGWASflow;

· VanOverbeeke opened on Aug 20, 2024

Error in rule extract_kmersGWAS

Status: Open.

#36 In akcorut/kGWASflow;

· ChristianDina opened on Jul 15, 2024

Results directories (qc and reads)

Status: Open.

#35 In akcorut/kGWASflow;

· ChristianDina opened on Jul 11, 2024

Something about string expected and not found.

Status: Open.

#34 In akcorut/kGWASflow;

· ChristianDina opened on Jun 19, 2024