Name	Name	Last commit message	Last commit date
Latest commit History 521 Commits
CRC	CRC
Nadya_merging	Nadya_merging
PDAC	PDAC
Test_peak_calling	Test_peak_calling
data.freeze	data.freeze
data_processing	data_processing
emt.analaysis	emt.analaysis
immune	immune
scrublet	scrublet
stroma	stroma
tumor_analysis	tumor_analysis
.DS_Store	.DS_Store
Calculate_DAMs.R	Calculate_DAMs.R
Call_MACS2_peaks.R	Call_MACS2_peaks.R
Cell_type_colors_panatac_v1.0.rds	Cell_type_colors_panatac_v1.0.rds
Colors_panatac_v1.0.rds	Colors_panatac_v1.0.rds
Integrate_withRNA.R	Integrate_withRNA.R
Integrate_withRNA_v2.0.R	Integrate_withRNA_v2.0.R
Integrate_withRNA_v3.0.R	Integrate_withRNA_v3.0.R
Merge_ATAC_samples_auto.v.3.0.R	Merge_ATAC_samples_auto.v.3.0.R
Merge_ATAC_samples_auto.v.3.0_mouse_liver.R	Merge_ATAC_samples_auto.v.3.0_mouse_liver.R
Merge_ATAC_samples_auto.v.3.1.R	Merge_ATAC_samples_auto.v.3.1.R
Merge_ATAC_samples_auto.v.4.0.R	Merge_ATAC_samples_auto.v.4.0.R
Merge_ATAC_samples_auto.v.4.1.R	Merge_ATAC_samples_auto.v.4.1.R
Merge_ATAC_samples_auto.v.4.1_by_cancer.R	Merge_ATAC_samples_auto.v.4.1_by_cancer.R
Merge_ATAC_samples_auto.v.4.2.R	Merge_ATAC_samples_auto.v.4.2.R
Merge_ATAC_samples_auto.v.5.0.R	Merge_ATAC_samples_auto.v.5.0.R
Merge_ATAC_samples_auto.v.5.0_by_cancer.R	Merge_ATAC_samples_auto.v.5.0_by_cancer.R
Merge_ATAC_samples_auto.v.5.1.R	Merge_ATAC_samples_auto.v.5.1.R
Merge_ATAC_samples_auto.v.5.2.R	Merge_ATAC_samples_auto.v.5.2.R
Merge_ATAC_samples_auto.v.5.3.R	Merge_ATAC_samples_auto.v.5.3.R
Merge_ATAC_samples_auto.v.5.3_by_cancer.R	Merge_ATAC_samples_auto.v.5.3_by_cancer.R
Merge_ATAC_samples_auto.v.5.4.R	Merge_ATAC_samples_auto.v.5.4.R
Merge_ATAC_samples_auto.v.5.4_by_cancer.R	Merge_ATAC_samples_auto.v.5.4_by_cancer.R
Merge_ATAC_samples_auto.v.5.4_by_cancer_common_peaks.R	Merge_ATAC_samples_auto.v.5.4_by_cancer_common_peaks.R
Merge_ATAC_samples_auto.v.5.4_one_cancer.R	Merge_ATAC_samples_auto.v.5.4_one_cancer.R
Merge_ATAC_samples_auto.v.5.5.R	Merge_ATAC_samples_auto.v.5.5.R
Merge_ATAC_samples_test.v.4.0.R	Merge_ATAC_samples_test.v.4.0.R
Merge_test_parallel.R	Merge_test_parallel.R
README.md	README.md
RunChromVar.R	RunChromVar.R
Run_cicero_tumor_only.R	Run_cicero_tumor_only.R
Subtype_markers_Pooled_data.2021-02-11.R	Subtype_markers_Pooled_data.2021-02-11.R
annotate_cell_types_mm_liver.R	annotate_cell_types_mm_liver.R
atac_pipeline_combo_v4.2.R	atac_pipeline_combo_v4.2.R
atac_pipeline_combo_v5.1.R	atac_pipeline_combo_v5.1.R
atac_pipeline_combo_v5.R	atac_pipeline_combo_v5.R
atac_pipeline_v.2.0_mouse.R	atac_pipeline_v.2.0_mouse.R
atac_pipeline_v3.0.R	atac_pipeline_v3.0.R
atac_pipeline_v3.0.combo.R	atac_pipeline_v3.0.combo.R
atac_pipeline_v4.0.R	atac_pipeline_v4.0.R
atac_pipeline_v5.0.R	atac_pipeline_v5.0.R
enriched_motifs.R	enriched_motifs.R
senescence_module_scores_atac.R	senescence_module_scores_atac.R

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521 Commits