0.4.2

Full Changelog: 0.4.1...0.4.2

What's Changed

• Create release.yml by @antoniojbt in #75

Full Changelog: 0.4.1...0.4.2

0.4.1: Merge pull request #72 from antoniojbt/codex/create-new-tag-and-release

What's Changed

• Release v0.3.9 by @antoniojbt in #72

Full Changelog: 0.4.0...0.4.1

refactored and updated

What's Changed

• Modernize packaging by @antoniojbt in #13
• Add GitHub Actions CI workflow by @antoniojbt in #15
• Add GitHub Actions CI workflow by @antoniojbt in #14
• Update tests.yml by @antoniojbt in #16
• Address CodeFactor feedback by @antoniojbt in #17
• Add script entry in pyproject by @antoniojbt in #18
• Update tests to use new CLI functions by @antoniojbt in #21
• Fix template symlinks by @antoniojbt in #22
• Centralize package version by @antoniojbt in #23
• Centralize package version by @antoniojbt in #19
• Fix template inclusion by @antoniojbt in #24
• Fix project scripts duplication by @antoniojbt in #25
• Modernize packaging by @antoniojbt in #20
• Fix unsafe YAML load by @antoniojbt in #26
• Fix shell process usage by @antoniojbt in #29
• Fix partial path process start by @antoniojbt in #28
• Fix c() around constant vectors by @antoniojbt in #32
• Remove unnecessary explicit returns by @antoniojbt in #31
• Fix Alpine apk command to use --no-cache best practice in Dockerfile by @Copilot in #40
• Fix explicit return statements to use implicit return behavior in R files by @Copilot in #46
• Fix apt-get cleanup in Dockerfile to follow Docker best practices by @Copilot in #45
• Fix Docker best practice: Add --no-install-recommends to apt-get commands by @Copilot in #44
• Fix Docker image tagging issue by adding explicit version tag by @Copilot in #43
• Fix unnecessary c() calls around single ranges in R code by @Copilot in #41
• Fix deprecated MAINTAINER instruction in Dockerfiles by @Copilot in #42
• Fix pip cache directory usage in Dockerfile by adding --no-cache-dir flag by @Copilot in #60
• Fix Docker image version tag in Dockerfile - add explicit :3.8 tag by @Copilot in #59
• Fix: Add --no-cache-dir flag to pip install commands in Dockerfile by @Copilot in #58
• Fix pip cache directory issue in Dockerfile by adding --no-cache-dir flag by @Copilot in #57
• Fix apt-get package list cleanup in Dockerfiles - resolves CodeFactor issue by @Copilot in #56
• Fix Docker image version tagging in Dockerfile by @Copilot in #54
• Fix Docker image version tagging in project template by @Copilot in #55
• Fix tests and reference files by @antoniojbt in #61
• Fix pipeline naming and rename logic by @antoniojbt in #63
• refactor and simplify main function by @antoniojbt in #62
• Fix subprocess path execution by @antoniojbt in #64
• Fix unsafe shell usage by @antoniojbt in #65
• Fix codefactor pip cache warnings by @antoniojbt in #66
• Fix codefactor lint on constant c() by @antoniojbt in #67
• Fix CodeFactor lint for R example by @antoniojbt in #68
• Refactor CLI logic by @antoniojbt in #70
• Refactor CLI logic by @antoniojbt in #69

New Contributors

• @Copilot made their first contribution in #40

Full Changelog: 0.3.7...0.4.0

cgatcore 0.5.13 plus minor bugs

0.3.7

update to 0.3.7 cgatcore 0.5.13 plus minor bugs

v0.3.6

updated to cgatcore 0.5.6

added tests, flake8, and minor updates

v0.3.5

added tests, flake8, and minor updates

non ascii fixes and minor updates

v0.3.4

non ascii characters and minor updates

minor bug fixes

v0.3.3

bug fixes

updated to cgat-core

v0.3.2

updated to cgat-core, including ini to yml

v0.3.1

minor bugs and updates to example