refactoring code#9

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jkanche wants to merge 21 commits intomainfrom

Commits on Feb 1, 2026

commit old code
jkanche
committed

Commits on Feb 2, 2026

consolidate ATACseq code and rename createGeneScoresSCE to createRegionSCE
Xiaosai Yao
committed
rename to createRegion in examples
Xiaosai Yao
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convert start, end and count to integers
Xiaosai Yao
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Commits on Feb 18, 2026

remove -1 from barcode names
Xiaosai Yao
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add matrix.name argument
Xiaosai Yao
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handle NA in fragment files
Xiaosai Yao
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simplify combine MAE
Xiaosai Yao
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rename createATACSCE to createTileSCE
Xiaosai Yao
committed

Commits on Feb 22, 2026

remove export of getSCEFromH5List
Xiaosai Yao
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test createTileSCE, createRegionSCE and all the utils functions
Xiaosai Yao
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replace filterDuplicateFeatures with Jay's code
Xiaosai Yao
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improve roxygen headers by defining link and better refining the arguments
Xiaosai Yao
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add NEWS
Xiaosai Yao
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add sessionInfo
Xiaosai Yao
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v 0.1.2
Xiaosai Yao
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remove redundant definition for lazydata
Xiaosai Yao
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Commits on Feb 23, 2026

edit headers
Xiaosai Yao
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retrieve barcodes with h5 file or from fragment files
Xiaosai Yao
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add tests for createMAEFromCellranger
Xiaosai Yao
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push back lazy data to stop check errors
Xiaosai Yao
committed