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  1. staphscope-typing-tool staphscope-typing-tool Public

    StaphScope is a comprehensive bioinformatics tool for Staphylococcus aureus genomic analysis including MLST typing, spa typing, SCCmec analysis, antimicrobial resistance detection, virulence factor…

    Python 33

  2. EcoliTyper EcoliTyper Public

    EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for clinical microbiology, outbreak investigations, and genomic res…

    Python 26

  3. acinetoscope acinetoscope Public

    AcinetoScope: A species-specific computational pipeline for rapid, comprehensive Acinetobacter baumannii outbreak investigation and resistance gene tracking

    Python 13

  4. pseudoscope pseudoscope Public

    A species‑specific bioinformatics suite for rapid and accessible Pseudomonas aeruginosa genomic analysis

    Python 9

  5. Kleboscope Kleboscope Public

    Kleboscope is A gene‑centric, species‑optimized computational pipeline for comprehensive Klebsiella pneumoniae genomic surveillance

    Python 5

  6. eskape-web-platform eskape-web-platform Public

    Welcome to the ESKAPE AMR Platform – a free, open-source web application that integrates seven species-specific genomic analysis pipelines into a single, user-friendly interface.

    HTML 7