Recentrifuge format#299
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SeanGolez wants to merge 11 commits into
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… a taxonomic rank
…Id and read count
add kaiju-countTaxonReads, which outputs a file with two columns: tax…
Added -s option to allow for the expanded viruses to be summarized to…
…out just in case an option to add a taxonomy name column is added.
Do not read taxonomy files because no look up occurs. Left commented …
-a option to kaijucountTaxonReads to allow output to include taxonomy names
…at for recentrifuge
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Change kaiju output to include query length and include script to reformat for recentrifuge.