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Calculate resource inter-dependencies - #2001

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Calculate resource inter-dependencies#2001
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@cthoyt

@cthoyt cthoyt commented Jun 25, 2026

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As part of nfdi-de/section-metadata-wg-onto#85, this script parses all resources annotated in the Bioregistry with an ontology artifact to identify what other resources they use, then puts them in the depends_on field

at a high level, this will allow for seeing which upper-level ontologies each resource uses (if any)

more detailed rules about what is an actual "dependency" are probably needed. e.g., cross-references probably shouldn't count this way

I also need to decide if this data should really live in Bioregistry or somewhere else.

cc @StroemPhi @matentzn

@cthoyt cthoyt added the NFDI German National Research Data Infrastructure (Nationale Forschungsdateninfrastruktur; NFDI) project label Jun 25, 2026
@matentzn

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I think this information would be very valuable but I worry about completeness, correctness, runtime, and complexity adding this to bioregistry built... I would say this is more like a research paper with a dashboard ala obo-health then an ETL pipeline folded into br.

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