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Add CLI for getting SSSOM - #518

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cthoyt merged 1 commit into
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sssom-cli
Jun 16, 2026
Merged

Add CLI for getting SSSOM#518
cthoyt merged 1 commit into
mainfrom
sssom-cli

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@cthoyt cthoyt commented Jun 16, 2026

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This PR adds an explicit CLI tool for writing full SSSOM. This shares an implementation with pyobo lookup mappings but also includes the full SSSOM metadata. Use it with:

$ pyobo lookup sssom uberon -o uberon.sssom.tsv

alternatively, if --output/-o is not given, will write to STDOUT

@cthoyt
cthoyt merged commit 1220231 into main Jun 16, 2026
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cthoyt deleted the sssom-cli branch June 16, 2026 10:56
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