Skip to content

deepcopy-layers in preprocess - #304

Open
avysogorets wants to merge 1 commit into
bowang-lab:mainfrom
avysogorets:copy-layers
Open

deepcopy-layers in preprocess#304
avysogorets wants to merge 1 commit into
bowang-lab:mainfrom
avysogorets:copy-layers

Conversation

@avysogorets

Copy link
Copy Markdown

scanpy transformations override previous layers (e.g., log1p transformation overrides normed layer) because they are copied by reference. Create a deepcopy instead before each transformation that is applied to an existing layer.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant