bump py3-bio from 0.1.3 to 0.1.4#646
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Pull request overview
This PR updates the pinned py3-bio container/tag used by multiple WDL tasks to avoid Cromwell/Terra issues with the prior multi-arch manifest format.
Changes:
- Bump module pin
broadinstitute/py3-biofrom0.1.3to0.1.4. - Update all affected WDL task
dockerdefaults fromquay.io/broadinstitute/py3-bio:0.1.3to:0.1.4.
Reviewed changes
Copilot reviewed 7 out of 7 changed files in this pull request and generated no comments.
Show a summary per file
| File | Description |
|---|---|
| requirements-modules.txt | Updates the module pin for broadinstitute/py3-bio to 0.1.4. |
| pipes/WDL/tasks/tasks_utils.wdl | Bumps py3-bio docker tag to 0.1.4 for utility tasks. |
| pipes/WDL/tasks/tasks_sarscov2.wdl | Bumps py3-bio docker tag to 0.1.4 for SARS-CoV-2 metadata tasks. |
| pipes/WDL/tasks/tasks_reports.wdl | Bumps py3-bio docker tag to 0.1.4 for reporting task(s). |
| pipes/WDL/tasks/tasks_ncbi.wdl | Bumps py3-bio docker tag to 0.1.4 for NCBI submission helper task(s). |
| pipes/WDL/tasks/tasks_demux.wdl | Bumps py3-bio docker tag to 0.1.4 for demux helper task(s). |
| pipes/WDL/tasks/tasks_assembly.wdl | Bumps py3-bio docker tag to 0.1.4 for assembly-related plotting/stats task(s). |
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Bump WDL tasks utilizing quay.io/broadinstitute/py3-bio from tag 0.1.3 to 0.1.4. The latter introduces fixes for Cromwell/Terra, switching the multi-arch manifest to Docker v2 instead of OCI format (for which the Cromwell-Quay combination behaves quite buggily)