bump viral-ngs and nextclade docker images#648
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dpark01
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Mar 4, 2026
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- viral-ngs 3.0.7 to 3.0.8
- nextclade 3.18.1 to 3.19.0
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Pull request overview
Updates pinned container image versions used by WDL workflows and module requirements, aligning pipeline execution environments with newer viral-ngs and nextclade releases.
Changes:
- Bump
broadinstitute/viral-ngsfrom3.0.7→3.0.8across WDL task docker references and module requirements. - Bump
nextstrain/nextcladefrom3.18.1→3.19.0in module requirements and Nextstrain WDL tasks.
Reviewed changes
Copilot reviewed 14 out of 14 changed files in this pull request and generated no comments.
Show a summary per file
| File | Description |
|---|---|
| requirements-modules.txt | Updates pinned module image versions for viral-ngs and nextclade. |
| pipes/WDL/tasks/tasks_utils.wdl | Updates viral-ngs docker tags used by utility tasks. |
| pipes/WDL/tasks/tasks_terra.wdl | Updates viral-ngs docker tags used by Terra helper tasks. |
| pipes/WDL/tasks/tasks_taxon_filter.wdl | Updates viral-ngs docker tags for taxon filtering tasks. |
| pipes/WDL/tasks/tasks_reports.wdl | Updates viral-ngs docker tags for reporting/metrics tasks. |
| pipes/WDL/tasks/tasks_read_utils.wdl | Updates viral-ngs docker tags for read utility tasks. |
| pipes/WDL/tasks/tasks_nextstrain.wdl | Updates nextclade docker tags and viral-ngs tags used by Nextstrain-related tasks. |
| pipes/WDL/tasks/tasks_ncbi.wdl | Updates viral-ngs docker tags used by NCBI-related tasks. |
| pipes/WDL/tasks/tasks_metagenomics.wdl | Updates viral-ngs docker tags for metagenomics tasks. |
| pipes/WDL/tasks/tasks_megablast.wdl | Updates viral-ngs docker tags used by megablast tasks. |
| pipes/WDL/tasks/tasks_intrahost.wdl | Updates viral-ngs docker tags for intrahost tasks. |
| pipes/WDL/tasks/tasks_interhost.wdl | Updates viral-ngs docker tags for interhost tasks. |
| pipes/WDL/tasks/tasks_demux.wdl | Updates viral-ngs docker tags for demux tasks. |
| pipes/WDL/tasks/tasks_assembly.wdl | Updates viral-ngs docker tags for assembly/alignment tasks. |
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