Bump docker image versions for ncbi-tools, nextclade, read-qc-tools, pangolin

[dpark01]

Summary

• Bump ncbi-tools from 2.11.1 to 2.12.0 (9 tasks in tasks_ncbi_tools.wdl)
• Bump nextclade from 3.19.0 to 3.21.0 (2 tasks in tasks_nextstrain.wdl)
• Bump read-qc-tools from 1.0.1 to 1.1.0 (1 task in tasks_reports.wdl)
• Bump pangolin from 4.3.3-pdata-1.36 to 4.4-pdata-1.38 (2 tasks in tasks_sarscov2.wdl)
• Updated requirements-modules.txt to match

Test plan

• CI WDL validation passes (miniwdl check + womtool)
• Integration tests pass for affected workflows

🤖 Generated with Claude Code

[Copilot]

Pull request overview

Updates pinned Docker image versions used by WDL task modules (and the central requirements-modules.txt manifest) to pick up newer releases of several upstream bioinformatics tools.

Changes:

• Bump ncbi-tools Docker tag to 2.12.0 across tasks_ncbi_tools.wdl and requirements-modules.txt.
• Bump nextclade Docker tag to 3.21.0 across tasks_nextstrain.wdl and requirements-modules.txt.
• Bump read-qc-tools Docker tag to 1.1.0 and pangolin to 4.4-pdata-1.38, keeping WDL runtimes aligned with requirements-modules.txt.

Reviewed changes

Copilot reviewed 5 out of 5 changed files in this pull request and generated no comments.

Show a summary per file

File	Description
requirements-modules.txt	Updates the pinned dependency image versions for the module version manifest used by CI/runtime checks.
pipes/WDL/tasks/tasks_ncbi_tools.wdl	Updates ncbi-tools runtime Docker image tag for NCBI submission/metadata tasks.
pipes/WDL/tasks/tasks_nextstrain.wdl	Updates nextclade runtime Docker image tag for Nextclade classification tasks.
pipes/WDL/tasks/tasks_reports.wdl	Updates read-qc-tools runtime Docker image tag for multiqc_from_bams.
pipes/WDL/tasks/tasks_sarscov2.wdl	Updates pangolin runtime Docker image tag for single- and multi-sample Pangolin tasks.

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