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Thoughts on using OmniC pipeline with Arima data

Status: Open.

#121 In c-zhou/yahs;

· V-JJ opened on Nov 23, 2025

Why did the QV value decrease significantly after using YAHS for HiC scaffolding?

Status: Open.

#120 In c-zhou/yahs;

· JieQYan opened on Nov 20, 2025

telo-motif option not in docker image

Status: Open.

#119 In c-zhou/yahs;

· Artifice120 opened on Aug 27, 2025

Which bam generated from HiC-Pro should be fed to yahs

Status: Open.

#118 In c-zhou/yahs;

· leon945945 opened on May 30, 2025

Alternate assembly has better scaffold N50 stats than primary assembly

Status: Open.

#117 In c-zhou/yahs;

· afiyachida opened on May 27, 2025

Initial input as scaffolds?

Status: Open.

#116 In c-zhou/yahs;

· ejc043 opened on May 27, 2025

Add an option to accept black contig/region list

Status: Open.

#115 In c-zhou/yahs;

· xiekunwhy opened on Apr 28, 2025

Scaffolding genomes with lots of repeat elements

Status: Open.

#114 In c-zhou/yahs;

· jomhoff opened on Apr 11, 2025

when generate hic contact map, why you produce a alignments_sorted.txt.part file then rename it to alignments_sorted.txt afterwords.

Status: Open.

#112 In c-zhou/yahs;

· dukecomeback opened on Apr 11, 2025

Telomeric repeats in first scaffold

Status: Open.

#111 In c-zhou/yahs;

· diana-moreno-santillan opened on Apr 11, 2025

issue with PoreC based scaffolding

Status: Open.

#110 In c-zhou/yahs;

· dasn588 opened on Feb 14, 2025

telo motif

Status: Open.

#109 In c-zhou/yahs;

· tamsinlh opened on Feb 5, 2025