(WIP) Add generic assay frequency table to Study View

packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal.ts

@@ -590,7 +590,9 @@ export type GenericAssayDataCount = {
 
 };
 export type GenericAssayDataCountFilter = {
-    'genericAssayDataFilters': Array < GenericAssayDataFilter >
+    'genericAssayDataFilters'?: Array < GenericAssayDataFilter >
+
+        'profileType'?: string
 
         'studyViewFilter': StudyViewFilter
 
@@ -608,6 +610,21 @@ export type GenericAssayDataFilter = {
 
         'values': Array < DataFilterValue >
 
+};
+export type GenericAssaySelectionValue = {
+    'stableId': string
+
+        'value': string
+
+};
+export type GenericAssaySelectionFilter = {
+    'patientLevel': boolean
+
+        'profileType': string
+
+        'values': Array < Array < GenericAssaySelectionValue >
+        >
+
 };
 export type GenericAssayEnrichment = {
     'genericEntityMetaProperties': {}
@@ -1553,6 +1570,8 @@ export type StudyViewFilter = {
 
         'genericAssayDataFilters': Array < GenericAssayDataFilter >
 
+        'genericAssaySelectionFilters': Array < GenericAssaySelectionFilter >
+
         'genomicDataFilters': Array < GenomicDataFilter >
 
         'genomicProfiles': Array < Array < string >

packages/cbioportal-ts-api-client/src/index.tsx

@@ -64,6 +64,8 @@ export {
     GenericAssayDataCountFilter,
     GenericAssayDataCountItem,
     GenericAssayDataFilter,
+    GenericAssaySelectionFilter,
+    GenericAssaySelectionValue,
     GenericAssayEnrichment,
     Geneset,
     GenesetCorrelation,

src/pages/studyView/StudyViewComparisonUtils.ts

@@ -210,6 +210,10 @@ export function getComparisonParamsForTable(
             return {
                 namespaceAttributeValues: selectedRowsKeys.slice(),
             };
+        case ChartTypeEnum.GENERIC_ASSAY_FREQUENCY_TABLE:
+            return {
+                genericAssayRowKeys: selectedRowsKeys.slice(),
+            };
         default:
             return {};
     }

src/pages/studyView/StudyViewConfig.ts

@@ -66,6 +66,7 @@ export enum ChartTypeEnum {
     BAR_CHART = 'BAR_CHART',
     SURVIVAL = 'SURVIVAL',
     TABLE = 'TABLE',
+    GENERIC_ASSAY_FREQUENCY_TABLE = 'GENERIC_ASSAY_FREQUENCY_TABLE',
     SCATTER = 'SCATTER',
     VIOLIN_PLOT_TABLE = 'VIOLIN_PLOT_TABLE',
     VARIANT_ANNOTATIONS_TABLE = 'VARIANT_ANNOTATIONS_TABLE',
@@ -91,6 +92,7 @@ export enum ChartTypeNameEnum {
     BAR_CHART = 'bar chart',
     SURVIVAL = 'survival plot',
     TABLE = 'table',
+    GENERIC_ASSAY_FREQUENCY_TABLE = 'table',
     SCATTER = 'density plot',
     VIOLIN_PLOT_TABLE = 'table',
     MUTATED_GENES_TABLE = 'table',
@@ -203,6 +205,11 @@ const studyViewFrontEnd = {
                 h: 2,
                 minW: 2,
             },
+            [ChartTypeEnum.GENERIC_ASSAY_FREQUENCY_TABLE]: {
+                w: 2,
+                h: 2,
+                minW: 2,
+            },
             [ChartTypeEnum.SURVIVAL]: {
                 w: 1,
                 h: 1,