Pinned Loading

1. protein_set_transformer protein_set_transformer Public

   Protein Set Transformer (PST) framework for training protein-language-model-based genome language models. Inference is possible for viral genomes using our pretrained viral foundation model.

   Jupyter Notebook 4 3

2. lightning-crossval lightning-crossval Public

   Cross validation with Lightning Fabric

   Python 4

3. metapyrodigal metapyrodigal Public

   Using pyrodigal for orf prediction for large volumes of metagenomic sequences efficiently

   Python

4. esm_embed esm_embed Public archive

   Generate ESM-2 embeddings

   Python 1 1

5. pyfastatools pyfastatools Public

   FASTA file parsing written in C++ with Python bindings

   Python 1