PySavime

This code repository (not yet in a mature stage) is an initiative for allowing Python code to directly communicate with SAVIME server; one can perform queries in and receive data from SAVIME by using its API. To use this API, you have to perform the following steps:

1. Install the following dependencies: cython, numpy, pandas, sortedcontainers, and xarray; you can do it by creating a new virtual environment based on the requirements.txt file.
2. Install SAVIME on your machine.
3. Clone this repository. For instance, run git clone https://github.com/dnasc/pysavime pysavime-src.
4. If you have changed the default location of SAVIME (while installing it), assign the directory containing the SAVIME library (libsavime.a) to the bash variable SAVIME_LIB.
5. In a terminal, run the command pip install -e path-to-pysavime-src: this command will install pysavime in editable mode.

If the compilation ran accordingly, you should be able to use the code in this repository. To test it, run python -c "import pysavime" in a terminal.

This repository is organized as follows:

• config: Configurations for global variables.
• _examples: Code usage examples.
• include: The header for the SAVIME library.
• logging_utility: Logging configurations.
• misc: Miscellaneous code: decorators, custom exceptions and command runner.
• savime: Cython code to communicate with SAVIME.
• schema: Set of classes for defining the schema of SAVIME elements: dataset, subtar and tar.
• util: Data structures and converters.