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circtools 1.1.0.7 released

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@tjakobi tjakobi released this 01 Oct 14:01
v1.1.0.7
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tjakobi Tobias Jakobi
GPG key ID: 4E323A70437A7DFA
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Learn about vigilant mode.
9bcad51
This commit was signed with the committer’s verified signature.
tjakobi Tobias Jakobi
GPG key ID: 4E323A70437A7DFA
Verified
Learn about vigilant mode.

We are proud to release the new version of circtools, 1.1.0.7 as of today.

Resolved code issues

  • 1.1.0.4 contains several bug fixes regarding the installation process, namely missing depencies for statsmodels
  • An error relating to pysam and HTSeq during from-scratch installations of DCC has been solved
  • Empty lines in DCC input files no longer result in incorrect behavior (Issue #64)
  • The enrich module's help entry for -c incorrectly referred to the circRNACount file while it should be the
    CircCoordinates

Resolved / improved documentation issues

  • The documentation now clearly states the Python2 dependency of DCC and FUCHS (Issue #60)
    • NOTE: DCC and FUCHS are right now tested with Python3, therefore the installation process will be more straightforward in upcoming releases
  • The documentation now uses consistent Python3 versions (Issue #61)
  • The documentation of the enrich module was updated with a background section (Issue #62)
  • The documentation was completely overhauled and now consistently uses one data set for all analyses (Issue #25 )
  • STAR and StringTie are now listed as dependencies int the documentation (Issue #66)
  • The documentation now uses publicly usable HTTPS git links (Issue #65)
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