Anntopia and BioPortal Connector

Until now I’ve implemented the Annotopia staff in DomeoClient as separate packages so that I could preserve the old code.

If you consider the connector to the BioPortal, in the BioPortalManager.java code we have a method selectConnector() that presented the following code.

public boolean selectConnector(IDomeo domeo) {
	if(_connector!=null) return true;
	_domeo = domeo;
	if(domeo.isStandaloneMode()) {
		_connector = new StandaloneBioPortalConnector();
	} else {
		if(domeo.isAnnotopiaEnabled()) {
			_connector = new AnnotopiaBioPortalConnector(domeo, null);
		} else if (domeo.isHostedMode()) {
			_connector = new GwtBioPortalServiceConnector();
		} else {
			// Real service
			_connector = new JsonBioPortalConnector(domeo);
		}
	}
	domeo.getLogger().debug(this, "BioPortal Connector selected: " + _connector.getClass().getName());
	return false;
} 

Therefore if the domeo.isAnnotopiaEnabled() is true the AnnotopiaBioPortalConnector gets injected. The AnnotopiaBioPortalConnector contains all the implementations for terms search and text mining.